Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02191 ATGGCGGTCCATTCTTCCAATCGCGACACTGATTCAGAGTTTGATCATAGCTCATCCCAACCGCGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCATATCGAAACTTCCAGCTTCCAACCTCCCCAGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACTGGTTGCGGTTACCTCGCCGGTGCAGTTGGAGGGGCGTCTACAGGACTTGTATCCGGCGTTAAATCTTTTGAATCAGGTGATACTATGAAACTCCGGATCAATCGGATCCTGAACTCGTCTGGTCATTCGGGGCGTCTCTGGGGAAATCGGCTTGGCGTGATTGGGCTGCTATATGCGGGTTTGGAGAGCGGAATTGAGGCTGTGAGGGATACGGACGATGTGTGGAACTGTGTTGCGGCCGGACTTGGTACTGGTGCGCTTTATCGTGCAGCAAGAGGGGTAAGATCGGCGGCGGTGGCTGGAGCTGTTGGCGGTGTCGTGGTTGGCTTGGCGGTGACGGGTAAGCAGATGTTGAAGCGGTCCTCCCGAATTCTTACTCCACAAATGTTCTCATTGAGGCACACTCTTTGTCTTCATCAACCTGGGATATTTACTAGTTTTGGTAGCTTGAACAAGTTGAGTAGAGGCATTCATCTCATGGAGAATGACAGAAGGCAAAATAAACTGTTTGCTGAGTATCTTGCTTTGGGAAAAGCTATGGCAGGTTTAGCTCCAGAAGGAACCCAATTTGATTCTCGCCAATACGATGCTAAAATGAATGAGATTCTTTCAGCCGAAGGGCAGGAATTTTTTACCTCATACGATGAAGTTTATGAAAGTTTTGATTCGATGGGGCTGCAAGAGAACCTCCTCAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCTGCAATTCAGCAAAGAGGTATAGTTCCCTTCTGCAAGGGCCTTGATGTGATTCAGCAGGCTCAATCTGGAACTGGAAAAACTGCAACTTTCTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAGTCCAGTGCCAGGCATTAGTTTTGGCACCGACTAGGGAGCTGGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGAGTTAAGGTTCATGCTTGTGTGGGAGGGACAAGTGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCATGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTGAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTATGATATTTTCCAGCTGTTGCCATCAAAAATTCAAGTTGGGGTATTCTCAGCCACAATGCCACCGGAAGCTTTGGAGATCACTAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAAGGTATCAAACAATTTTACGTAAATGTTGATAAGGAAGATTGGAAGCTTGAAACTCTATGTGATCTGTACGAGACTCTGGCTATCACTCAAAGTGTTATCTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACGGACAAGATGAGAAGCCGTGATCATACCGTATCGGCCACTCATGGTGACATGGACCAGAACACTCGTGATATAATCATGCGTGAATTTCGTTCTGGGTCGTCTCGTGTTCTTATCACAACTGACTTGTTAGCTCGTGGTATCGATGTTCAGCAAGTGTCCCTTGTCATAAATTATGATTTGCCAACCCAACCTGAAAATTACCTCCATCGAATTGGTCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATTGAGGAGCTGCCAGCCAATGTTGCAGATCTTCTATGA 1977 45.83 MAVHSSNRDTDSEFDHSSSQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGIEAVRDTDDVWNCVAAGLGTGALYRAARGVRSAAVAGAVGGVVVGLAVTGKQMLKRSSRILTPQMFSLRHTLCLHQPGIFTSFGSLNKLSRGIHLMENDRRQNKLFAEYLALGKAMAGLAPEGTQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDERMLFDIQKFYNVVIEELPANVADLL* 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26465737 26471774 + Chy1G021910.1 Chy01g02191 219372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02191 658 MobiDBLite consensus disorder prediction 1 25 - -
Chy01g02191 658 Gene3D - 275 493 IPR027417 -
Chy01g02191 658 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 432 440 IPR000629 -
Chy01g02191 658 Gene3D - 494 658 IPR027417 -
Chy01g02191 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 639 IPR027417 -
Chy01g02191 658 Pfam DEAD/DEAH box helicase 310 471 IPR011545 GO:0003676|GO:0005524
Chy01g02191 658 SMART helicmild6 538 619 IPR001650 -
Chy01g02191 658 SMART ultradead3 304 501 IPR014001 -
Chy01g02191 658 Pfam Helicase conserved C-terminal domain 511 619 IPR001650 -
Chy01g02191 658 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 486 IPR014001 -
Chy01g02191 658 PANTHER RNA HELICASE 268 658 - -
Chy01g02191 658 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 497 658 IPR001650 -
Chy01g02191 658 CDD SF2_C_DEAD 498 628 - -
Chy01g02191 658 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 285 313 IPR014014 GO:0003724
Chy01g02191 658 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 268 658 - -
Chy01g02191 658 Pfam Tim17/Tim22/Tim23/Pmp24 family 64 173 - -
Chy01g02191 658 CDD DEADc_EIF4A 290 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02191 Chy-Chr1:26465737 Chy06g00183 Chy-Chr6:1190164 2.03E-83 dispersed
Chy02g01804 Chy-Chr2:19951043 Chy01g02191 Chy-Chr1:26465737 5.06E-52 dispersed
Chy04g01199 Chy-Chr4:18433157 Chy01g02191 Chy-Chr1:26465737 4.05E-26 transposed
Chy04g01200 Chy-Chr4:18434086 Chy01g02191 Chy-Chr1:26465737 1.11E-143 transposed
Chy04g01998 Chy-Chr4:25791319 Chy01g02191 Chy-Chr1:26465737 3.76E-54 transposed
Chy01g02191 Chy-Chr1:26465737 Chy04g00666 Chy-Chr4:7687592 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02191 K03257 - csv:101221456 819.305