Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy01g02200 | ATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAATCTGAATTTCCCAATCAATATTTTGCTCCTCAAACAACCCAACAACAACAACCTCCTCCTCCTAAGAAGAAGCGCAACCTTCCTGGAAATCCCGACCCAGATGCTGAAGTGATAGCATTATCGCCGAAGACATTGATGGCGACGAATAGGTTTGTGTGTGAGATATGCAACAAAGGGTTTCAGAGAGATCAGAATCTACAATTACACAGAAGAGGACACAATTTGCCATGGAAACTAAAGCAAAGATCAAACAAAGAGATAATAAAGAAGAAAGTATATGTTTGTCCAGAAGTGAGTTGTGTTCATCATGATCCATCAAGAGCACTTGGAGATTTAACAGGAATTAAGAAGCATTTTTGTAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAATGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATCTGTGGCACTAAAGAGTATAGATGTGACTGTGGCACTCTCTTTTCAAGGAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCAATGGCATTAAACCCTCTTCTCTCATCTTACAACCACAATAACAATAATAGTAATTCACAAGATCATCAATTTTGTAATAATCTCGCACTTAAACGAGATTTCGACGACACCAACAACAGCAACAGCAACAACAACAATAACCATTTGAGAGTGGAAATTCCACCGTGGCTACAACCATCATCAGATCATCTGATGGTGGGGAGTGGCGGCCAAGGGGAGAACAATGATGAAACTGTAAACCCTAACCCTAGTAGTAATAGTAGTAGTAGGGGGTGCGGGGCCAGCAGGAGAAGTGCTGGTGTTGGAGTTGGTGTTGGTACTCCTAATAATCCTAATCATCCTTGTGAGTTATACCAATCGTCTTCACATATATCAGCGACTGCACTGCTGCAGAAGGCAGCCCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTTTCCCAAGGCCCCACAACCTTCTTCACGTGTCTACAGGAAATTTTGGAGAGATAGGATTATGGTCAGGTGATGTTGAAATTGGTAGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGCTGTGAGTTGTAGCAGCAGTAGTTGTACTGATTACGGGAATAAAGCTGCTGCTTCTGCTTCTGCTACTGCTTCTGCTTCCGCTTCAGCTTCCACCACTTTTCTTCACGACATTATTAACAATTCCCTATCTTCTCCTTCTCCTTCTCATCCTAACTTCCTCCAACAACACAACTCCTCCTTCCACGACACCGCTTTTGCAACTATGCATCATCATCATCATCACAACGTACCCATCATCCCCACCACTGCCCCGGCTTCGGGCGGTCGAAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCCCGTGGAGATATTCTAAGCCTTACTGGTTTTGGAAACTGTATTGTTCCTAATTCCTCCAATCTTCACCCTCAAATCCAGAAGCCATGGCAGGGTTAG | 1620 | 43.77 | MDENLSNLTSASGEATASVSSANKSEFPNQYFAPQTTQQQQPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEIIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNHNNNNSNSQDHQFCNNLALKRDFDDTNNSNSNNNNNHLRVEIPPWLQPSSDHLMVGSGGQGENNDETVNPNPSSNSSSRGCGASRRSAGVGVGVGTPNNPNHPCELYQSSSHISATALLQKAAQMGATMSSTTTTSGSFPRPHNLLHVSTGNFGEIGLWSGDVEIGRGGGGGGGGGGGGGGAVSCSSSSCTDYGNKAAASASATASASASASTTFLHDIINNSLSSPSPSHPNFLQQHNSSFHDTAFATMHHHHHHNVPIIPTTAPASGGRSDGLTRDFLGLRPLSRGDILSLTGFGNCIVPNSSNLHPQIQKPWQG* | 540 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 26516668 | 26519667 | + | Chy1G022000.1 | Chy01g02200 | 219381 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy01g02200 | 539 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 7 | 519 | - | - | |
Chy01g02200 | 539 | MobiDBLite | consensus disorder prediction | 269 | 312 | - | - | |
Chy01g02200 | 539 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Chy01g02200 | 539 | Gene3D | Classic Zinc Finger | 130 | 209 | - | - | |
Chy01g02200 | 539 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 75 | 97 | IPR013087 | - | |
Chy01g02200 | 539 | SUPERFAMILY | beta-beta-alpha zinc fingers | 74 | 172 | IPR036236 | - | |
Chy01g02200 | 539 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 7 | 519 | - | - | |
Chy01g02200 | 539 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 77 | 97 | IPR013087 | - | |
Chy01g02200 | 539 | Gene3D | Classic Zinc Finger | 54 | 125 | - | - | |
Chy01g02200 | 539 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Chy01g02200 | 539 | MobiDBLite | consensus disorder prediction | 275 | 305 | - | - | |
Chy01g02200 | 539 | SMART | c2h2final6 | 75 | 97 | IPR013087 | - | |
Chy01g02200 | 539 | SMART | c2h2final6 | 152 | 172 | IPR013087 | - | |
Chy01g02200 | 539 | SMART | c2h2final6 | 117 | 147 | IPR013087 | - | |
Chy01g02200 | 539 | Pfam | Zinc finger, C2H2 type | 75 | 97 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g02200 | Chy-Chr1:26516668 | Chy02g00663 | Chy-Chr2:4027016 | 1.41E-113 | dispersed | |
Chy01g02200 | Chy-Chr1:26516668 | Chy04g00655 | Chy-Chr4:7508627 | 6.48E-112 | wgd | |
Chy01g02200 | Chy-Chr1:26516668 | Chy07g00247 | Chy-Chr7:1959247 | 2.30E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17392 | PF00096 | zf-C2H2 | 0.0055 | CL0361 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy01g02200 | K25870 | - | csv:101220200 | 863.218 |