Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02200 ATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAATCTGAATTTCCCAATCAATATTTTGCTCCTCAAACAACCCAACAACAACAACCTCCTCCTCCTAAGAAGAAGCGCAACCTTCCTGGAAATCCCGACCCAGATGCTGAAGTGATAGCATTATCGCCGAAGACATTGATGGCGACGAATAGGTTTGTGTGTGAGATATGCAACAAAGGGTTTCAGAGAGATCAGAATCTACAATTACACAGAAGAGGACACAATTTGCCATGGAAACTAAAGCAAAGATCAAACAAAGAGATAATAAAGAAGAAAGTATATGTTTGTCCAGAAGTGAGTTGTGTTCATCATGATCCATCAAGAGCACTTGGAGATTTAACAGGAATTAAGAAGCATTTTTGTAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAATGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATCTGTGGCACTAAAGAGTATAGATGTGACTGTGGCACTCTCTTTTCAAGGAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCAATGGCATTAAACCCTCTTCTCTCATCTTACAACCACAATAACAATAATAGTAATTCACAAGATCATCAATTTTGTAATAATCTCGCACTTAAACGAGATTTCGACGACACCAACAACAGCAACAGCAACAACAACAATAACCATTTGAGAGTGGAAATTCCACCGTGGCTACAACCATCATCAGATCATCTGATGGTGGGGAGTGGCGGCCAAGGGGAGAACAATGATGAAACTGTAAACCCTAACCCTAGTAGTAATAGTAGTAGTAGGGGGTGCGGGGCCAGCAGGAGAAGTGCTGGTGTTGGAGTTGGTGTTGGTACTCCTAATAATCCTAATCATCCTTGTGAGTTATACCAATCGTCTTCACATATATCAGCGACTGCACTGCTGCAGAAGGCAGCCCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTTTCCCAAGGCCCCACAACCTTCTTCACGTGTCTACAGGAAATTTTGGAGAGATAGGATTATGGTCAGGTGATGTTGAAATTGGTAGAGGAGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAGCTGTGAGTTGTAGCAGCAGTAGTTGTACTGATTACGGGAATAAAGCTGCTGCTTCTGCTTCTGCTACTGCTTCTGCTTCCGCTTCAGCTTCCACCACTTTTCTTCACGACATTATTAACAATTCCCTATCTTCTCCTTCTCCTTCTCATCCTAACTTCCTCCAACAACACAACTCCTCCTTCCACGACACCGCTTTTGCAACTATGCATCATCATCATCATCACAACGTACCCATCATCCCCACCACTGCCCCGGCTTCGGGCGGTCGAAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCCCGTGGAGATATTCTAAGCCTTACTGGTTTTGGAAACTGTATTGTTCCTAATTCCTCCAATCTTCACCCTCAAATCCAGAAGCCATGGCAGGGTTAG 1620 43.77 MDENLSNLTSASGEATASVSSANKSEFPNQYFAPQTTQQQQPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEIIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNHNNNNSNSQDHQFCNNLALKRDFDDTNNSNSNNNNNHLRVEIPPWLQPSSDHLMVGSGGQGENNDETVNPNPSSNSSSRGCGASRRSAGVGVGVGTPNNPNHPCELYQSSSHISATALLQKAAQMGATMSSTTTTSGSFPRPHNLLHVSTGNFGEIGLWSGDVEIGRGGGGGGGGGGGGGGAVSCSSSSCTDYGNKAAASASATASASASASTTFLHDIINNSLSSPSPSHPNFLQQHNSSFHDTAFATMHHHHHHNVPIIPTTAPASGGRSDGLTRDFLGLRPLSRGDILSLTGFGNCIVPNSSNLHPQIQKPWQG* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26516668 26519667 + Chy1G022000.1 Chy01g02200 219381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02200 539 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 519 - -
Chy01g02200 539 MobiDBLite consensus disorder prediction 269 312 - -
Chy01g02200 539 MobiDBLite consensus disorder prediction 1 37 - -
Chy01g02200 539 Gene3D Classic Zinc Finger 130 209 - -
Chy01g02200 539 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Chy01g02200 539 SUPERFAMILY beta-beta-alpha zinc fingers 74 172 IPR036236 -
Chy01g02200 539 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 7 519 - -
Chy01g02200 539 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Chy01g02200 539 Gene3D Classic Zinc Finger 54 125 - -
Chy01g02200 539 MobiDBLite consensus disorder prediction 1 59 - -
Chy01g02200 539 MobiDBLite consensus disorder prediction 275 305 - -
Chy01g02200 539 SMART c2h2final6 75 97 IPR013087 -
Chy01g02200 539 SMART c2h2final6 152 172 IPR013087 -
Chy01g02200 539 SMART c2h2final6 117 147 IPR013087 -
Chy01g02200 539 Pfam Zinc finger, C2H2 type 75 97 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02200 Chy-Chr1:26516668 Chy02g00663 Chy-Chr2:4027016 1.41E-113 dispersed
Chy01g02200 Chy-Chr1:26516668 Chy04g00655 Chy-Chr4:7508627 6.48E-112 wgd
Chy01g02200 Chy-Chr1:26516668 Chy07g00247 Chy-Chr7:1959247 2.30E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17392 PF00096 zf-C2H2 0.0055 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02200 K25870 - csv:101220200 863.218