Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy01g02202 ATGAGCCCCATCACTCACCACCACCACCACCACCTTTCCAAATCCTCCACCGCCCCCGTCACAACCTCCACTTCTTCCTCCACTACCCAAGCCTGCGCCGCTTGTAAATACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTTGCTCCTTATTTCCCTCACGATCGCCAACGTCAATTCTTAAACGCTCATAAACTCTTCGGCGTTAGCAATATTACTAAAATTATCAAGAATCTTGATCCGTTCGAGAAGGAAGAAGCAATGCGTACCATTATTTTTCAATCTGATGTTCGATCCGTTGATCCTGTCGGCGGTTGCTATCGGATTATTCGAGATCTTCAACGTCAAATTGAATATAATAAGGCGGAGCTTGAGATCGTGCTTCATCAATTGGCGATTTGTAAGCAACAGGCCGCTGCTGCCGCGGCTGCTGCTGCTGCTGCCGCGATTCTTGAAGGGGATCCGATGAGTGGATATGGCGGGATTGAGCATCAGTTTGTGGAAGGATATGAAGGCGAAGGGTTTGTGGTCGGGGAAAATGAGAATGGAGAGAGTTTGGAAGATCAGGAAGTGGAGGTTTGGGGAATTCAAGATTCCTGTTCTTCATTGCAATTGAAACAAGCTGGCTCTGTTCATGATTTTCATGACATCAAAATCCACGATAATAATCAACATCAACATCAACAACAACTTCTTAAATTTCAAATCGATCATCATCAAGATTTGGTTCATCAAAGTGAAGAACCAATGCTGAAGATGGACAATATGATATTGAAAGAAGATTCTGACCCAATACAACAGGCTCAAGATCAAGAGCTTAAAGGTGCAGTAGACGCTTTATTTACCTTCCCATCTTGTGATACTTAG 867 44.52 MSPITHHHHHHLSKSSTAPVTTSTSSSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYNKAELEIVLHQLAICKQQAAAAAAAAAAAAILEGDPMSGYGGIEHQFVEGYEGEGFVVGENENGESLEDQEVEVWGIQDSCSSLQLKQAGSVHDFHDIKIHDNNQHQHQQQLLKFQIDHHQDLVHQSEEPMLKMDNMILKEDSDPIQQAQDQELKGAVDALFTFPSCDT* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26529382 26530755 + Chy1G022020.1 Chy01g02202 219383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy01g02202 288 MobiDBLite consensus disorder prediction 1 24 - -
Chy01g02202 288 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 25 251 - -
Chy01g02202 288 Pfam Lateral organ boundaries (LOB) domain 31 126 IPR004883 -
Chy01g02202 288 ProSiteProfiles LOB domain profile. 30 131 IPR004883 -
Chy01g02202 288 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 25 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02202 Chy-Chr1:26529382 Chy09g00277 Chy-Chr9:2327540 1.85E-34 dispersed
Chy01g02202 Chy-Chr1:26529382 Chy02g02604 Chy-Chr2:29255861 3.61E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17393 PF03195 LOB 1.10E-35 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy01g02202 - - csv:105436286 496.893