Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy01g02202 | ATGAGCCCCATCACTCACCACCACCACCACCACCTTTCCAAATCCTCCACCGCCCCCGTCACAACCTCCACTTCTTCCTCCACTACCCAAGCCTGCGCCGCTTGTAAATACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTTGCTCCTTATTTCCCTCACGATCGCCAACGTCAATTCTTAAACGCTCATAAACTCTTCGGCGTTAGCAATATTACTAAAATTATCAAGAATCTTGATCCGTTCGAGAAGGAAGAAGCAATGCGTACCATTATTTTTCAATCTGATGTTCGATCCGTTGATCCTGTCGGCGGTTGCTATCGGATTATTCGAGATCTTCAACGTCAAATTGAATATAATAAGGCGGAGCTTGAGATCGTGCTTCATCAATTGGCGATTTGTAAGCAACAGGCCGCTGCTGCCGCGGCTGCTGCTGCTGCTGCCGCGATTCTTGAAGGGGATCCGATGAGTGGATATGGCGGGATTGAGCATCAGTTTGTGGAAGGATATGAAGGCGAAGGGTTTGTGGTCGGGGAAAATGAGAATGGAGAGAGTTTGGAAGATCAGGAAGTGGAGGTTTGGGGAATTCAAGATTCCTGTTCTTCATTGCAATTGAAACAAGCTGGCTCTGTTCATGATTTTCATGACATCAAAATCCACGATAATAATCAACATCAACATCAACAACAACTTCTTAAATTTCAAATCGATCATCATCAAGATTTGGTTCATCAAAGTGAAGAACCAATGCTGAAGATGGACAATATGATATTGAAAGAAGATTCTGACCCAATACAACAGGCTCAAGATCAAGAGCTTAAAGGTGCAGTAGACGCTTTATTTACCTTCCCATCTTGTGATACTTAG | 867 | 44.52 | MSPITHHHHHHLSKSSTAPVTTSTSSSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYNKAELEIVLHQLAICKQQAAAAAAAAAAAAILEGDPMSGYGGIEHQFVEGYEGEGFVVGENENGESLEDQEVEVWGIQDSCSSLQLKQAGSVHDFHDIKIHDNNQHQHQQQLLKFQIDHHQDLVHQSEEPMLKMDNMILKEDSDPIQQAQDQELKGAVDALFTFPSCDT* | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 26529382 | 26530755 | + | Chy1G022020.1 | Chy01g02202 | 219383 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy01g02202 | 288 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Chy01g02202 | 288 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 25 | 251 | - | - | |
Chy01g02202 | 288 | Pfam | Lateral organ boundaries (LOB) domain | 31 | 126 | IPR004883 | - | |
Chy01g02202 | 288 | ProSiteProfiles | LOB domain profile. | 30 | 131 | IPR004883 | - | |
Chy01g02202 | 288 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 22 | 25 | 251 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g02202 | Chy-Chr1:26529382 | Chy09g00277 | Chy-Chr9:2327540 | 1.85E-34 | dispersed | |
Chy01g02202 | Chy-Chr1:26529382 | Chy02g02604 | Chy-Chr2:29255861 | 3.61E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17393 | PF03195 | LOB | 1.10E-35 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy01g02202 | - | - | csv:105436286 | 496.893 |