Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00002 ATGGAGAGCCATGGAGCCGGTAGTTATTTCGTTGACGAGAAGGCCGTTCTTGTTGAGAACATTTTTTTCGACTTCCTTAAAAGTTTTCGCATAAATGGGAACTCTGGTGACCCTTACTACGAGGCAGAGGTAGAAGCGATGATGGCTGGCGAATCTAACACCATGTTCATTGATTTTGCTCACCTCATGGGCTCCAATAATCTTCTTAACATTGCAATCGCCGACGAATATCTGAGGTTTGAACCATACCTGAAGAACGCTTGTAAGCGATTCGTAATGGAGCAGAATCCTTCTTTCATCGCTGACGATAACCCCTTCAAGGACATAAATGTTGCTTTCTTTAACATTCCTGTCTCTAAAAGGTTGAGAGAATTGACTACTGCAGAGATTGGGAAATTAGTATCCGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTTAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTCGAACAACAATTTAAGTACACCGAGCCAACAATATGCATGAACCCAACCTGTTCGAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAGAGGAGATTCCAGCTGGCTCTCTCCCACGATCCTTGGATGTTATTCTCCGCCATGAAATGGTTGAACGAGCTAGGGCTGGAGACACGGTCATCTTCGCGGGTACAGTAGTTGTCATACCAGATATATTAGCACTAGCCTCTCCGGGAGAAAGAGCAGAATGTCGTAGAGAAGCTTCAGAGCGAAGAAACTCTGCAGTTGGACATGAAGGAATGAGGGGGTTACGAGCACTAGGAGTGAGGGACCTGTCCTATCGCCTGGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGAATTTTGACATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAGTTTACCACTGGAGAGCTGGATGACGTTCAAAGGATGAGGAATACACCTGACTTTTTCAACAGACTTGTTGATAGCATTGCACCTGCAGTCTTTGGCCATCAAGACATCAAGCGAGCAATCTTGCTGATGCTGTTAGGTGGTGTCCACAAGTTAACTCATGAAGGCATTAACCTTCGAGGTGACATCAACGTCTGTATAGTAGGAGATCCAAGCTGTGCGAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCCGACAATGGTATTTGCTGTATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACAAAAGCCGGAATACAGGCCACACTAAATGCTAGGACATCAATCCTCGCTGCTGCTAATCCTACAGGAGGGCGGTATGACAAGTCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTCGTCTACGTGATGATAGATGATCCAGATGATCAAACAGACTACCATATCGCACACCACATTGTGAGAGTACACCAGAAGCATGAAGATGCTCTTGCTCCTGCATTTACTACTGCAGAGTTGAAGCGTTACATTGCATATGCAAAAACTTTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAAGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCTGGATGTAGGGTTGCCTATCGCATGACAGTCAGGCAGCTTGAGGCATTAATAAGGTTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACTCTGGTTCAACCGCGTCATGTTCGTTTAGCAGTGACTTTACTGAAAACTTCAATAATCAGTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAACTAATGGAGGTGGAGATGGTGATAATAATGCCGATGGGCGTAATGAGGTTGATGCTAAACCTAGGAACGGTGCAACAGAGGCAACTACTGGAAATAGTGAAATGGGTTCAGGTTCTGGAAATAGTCAACATAGGAAGGAGAAACTTCTCGTGAGCGATGAATATTTTCAGAGAGTTACCCAAGCCCTTGTGATGCGCCTCAGACAGCACGAAGAATATGTGAATCAAGAAGGACCTGGGCTGGCGGGAATGAGGCAGAGAGACTTAATTGAATGGTATGTGGATCAACAGAACGAAAGAAATAGCTATAGCTCCATGGACGAGGCAAATAAAGAAATTAAATTAGTTAGAGCTATTATCCAGCATTTGATAGTGCAGGAAGGTCATTTGATAGTGGTAGATGATGGGAGGCCGGTAGATGGCGAGGTTGAAGGCGAACCACCATCAATAAGAATTAGAAATAACAGGATTCTAGTTGTGGCTCCTAATTATGTCGTCGATTGA 2520 44.21 MESHGAGSYFVDEKAVLVENIFFDFLKSFRINGNSGDPYYEAEVEAMMAGESNTMFIDFAHLMGSNNLLNIAIADEYLRFEPYLKNACKRFVMEQNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSEEIPAGSLPRSLDVILRHEMVERARAGDTVIFAGTVVVIPDILALASPGERAECRREASERRNSAVGHEGMRGLRALGVRDLSYRLAFIANSVQVLDGRRNFDIRNRKKDADEDNQQFTTGELDDVQRMRNTPDFFNRLVDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALAPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGCRVAYRMTVRQLEALIRLSEAIARSYLETLVQPRHVRLAVTLLKTSIISVESSEIDLSEFQEETNGGGDGDNNADGRNEVDAKPRNGATEATTGNSEMGSGSGNSQHRKEKLLVSDEYFQRVTQALVMRLRQHEEYVNQEGPGLAGMRQRDLIEWYVDQQNERNSYSSMDEANKEIKLVRAIIQHLIVQEGHLIVVDDGRPVDGEVEGEPPSIRIRNNRILVVAPNYVVD* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43817 49706 - Chy2G022690.1 Chy02g00002 219450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00002 839 Pfam MCM AAA-lid domain 571 656 IPR041562 -
Chy02g00002 839 CDD MCM6 349 655 - -
Chy02g00002 839 ProSitePatterns MCM family signature. 455 463 IPR018525 GO:0003677|GO:0005524|GO:0006260
Chy02g00002 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 657 IPR027417 -
Chy02g00002 839 Gene3D - 10 118 - -
Chy02g00002 839 ProSiteProfiles MCM family domain profile. 346 552 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00002 839 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 169 186 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Chy02g00002 839 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 77 89 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Chy02g00002 839 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 281 302 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Chy02g00002 839 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 222 233 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Chy02g00002 839 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 119 131 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Chy02g00002 839 Gene3D - 149 200 - -
Chy02g00002 839 Pfam MCM N-terminal domain 21 115 IPR027925 -
Chy02g00002 839 Pfam MCM P-loop domain 335 556 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00002 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 475 488 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00002 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 526 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00002 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 387 402 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00002 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 499 511 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00002 839 PRINTS Mini-chromosome maintenance (MCM) protein family signature 447 461 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00002 839 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 12 789 - -
Chy02g00002 839 SMART mcm 118 657 IPR031327 GO:0003677|GO:0005524|GO:0032508
Chy02g00002 839 Pfam MCM6 C-terminal winged-helix domain 720 838 IPR041024 -
Chy02g00002 839 MobiDBLite consensus disorder prediction 697 717 - -
Chy02g00002 839 Gene3D - 122 250 IPR012340 -
Chy02g00002 839 Gene3D - 327 673 IPR027417 -
Chy02g00002 839 Pfam MCM OB domain 122 250 IPR033762 -
Chy02g00002 839 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 12 789 IPR031327 GO:0003677|GO:0005524|GO:0032508
Chy02g00002 839 MobiDBLite consensus disorder prediction 670 718 - -
Chy02g00002 839 Gene3D - 716 839 - -
Chy02g00002 839 SUPERFAMILY Nucleic acid-binding proteins 22 252 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00002 K02542 MCM6; DNA replication licensing factor MCM6 [EC:5.6.2.3] - csv:101219775 1604.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00756 Chy-Chr1:5647357 Chy02g00002 Chy-Chr2:43817 8.57E-119 dispersed
Chy02g00002 Chy-Chr2:43817 Chy05g01255 Chy-Chr5:16905791 3.73E-99 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G14700 66.0 1.6e-267 919.1
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G14700 69.2 8.0e-155 544.7
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G14700 64.4 3.8e-48 190.3
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G12620 67.9 7.0e-276 946.8
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G12620 69.5 2.3e-154 543.1
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G12620 66.7 9.8e-52 202.2
Chy03g01522 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.5 1.1e-140 496.5
Chy10g00355 . 9 413 Core DNA Replication Machinery Family AT2G01120 64.6 1.8e-153 539.3
Chy11g01648 . 3 524 Core DNA Replication Machinery Family AT4G29910 58.2 8.9e-169 590.5
Chy05g00660 . 1 254 Core DNA Replication Machinery Family AT1G26840 66.5 2.4e-90 328.9
Chy01g00870 . 34 829 Core DNA Replication Machinery Family AT1G79150 57.8 2.5e-244 842.0
Chy04g01347 . 10 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1347.0
Chy02g00156 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 1.1e-267 919.1
Chy01g00756 . 1 821 Core DNA Replication Machinery Family AT2G16440 76.8 0.0e+00 1120.9
Chy05g01255 . 1 717 Core DNA Replication Machinery Family AT2G07690 77.8 0.0e+00 1078.2
Chy02g00002 . 7 840 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1190.3
Chy01g01752 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.4
Chy11g01344 . 38 500 Core DNA Replication Machinery Family AT2G29680 60.9 1.2e-159 560.1
Chy11g01344 . 22 465 Core DNA Replication Machinery Family AT1G07270 58.2 1.5e-140 496.5
Chy01g01391 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.4 4.1e-257 884.0
Chy04g02091 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1085.5
Chy01g00231 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.8 2.7e-286 981.1
Chy11g00257 . 18 420 Core DNA Replication Machinery Family AT2G20980 55.8 8.0e-116 414.1
Chy06g01182 . 7 192 Core DNA Replication Machinery Family AT1G77320 66.7 3.6e-72 270.4
Chy01g02007 . 1 196 Core DNA Replication Machinery Family AT1G80190 66.5 3.6e-72 268.1
Chy07g00809 . 743 887 Core DNA Replication Machinery Family AT3G12530 71.7 1.8e-60 228.8
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT1G19080 67.6 1.1e-62 236.5
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT3G55490 67.6 1.1e-62 236.5
Chy06g00159 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 3.1e-49 191.8
Chy11g00218 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1748.0
Chy12g01485 . 81 704 Core DNA Replication Machinery Family AT1G67630 61.7 4.3e-217 751.1
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy09g00091 . 7 469 Core DNA Replication Machinery Family AT5G41880 61.1 1.5e-166 582.8
Chy08g00986 . 1 1000 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1652.1
Chy04g01776 . 41 282 Core DNA Replication Machinery Family AT2G42120 78.9 1.6e-117 419.9
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy11g00894 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.3 0.0e+00 2984.5
Chy11g00894 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2949.5
Chy12g01602 . 1 258 Core DNA Replication Machinery Family AT5G22110 76.4 9.7e-119 424.1
Chy05g00194 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.5 1.3e-307 1052.4
Chy06g01971 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.7 6.0e-173 603.6
Chy08g00054 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.8 8.6e-178 619.8
Chy07g00561 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 2.4e-153 538.5
Chy03g00774 . 6 220 Core DNA Replication Machinery Family AT1G77470 76.2 1.8e-93 339.7
Chy03g00775 . 1 216 Core DNA Replication Machinery Family AT1G77470 78.3 3.5e-89 325.5
Chy05g01462 . 26 618 Core DNA Replication Machinery Family AT2G06510 67.7 6.6e-250 860.1
Chy06g02198 . 28 701 Core DNA Replication Machinery Family AT2G06510 51.3 1.6e-200 696.0
Chy02g02440 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 3.7e-245 844.3
Chy06g02198 . 6 810 Core DNA Replication Machinery Family AT5G45400 53.1 9.1e-234 807.0
Chy02g02440 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 6.3e-240 827.0
Chy06g02198 . 1 796 Core DNA Replication Machinery Family AT4G19130 54.2 5.6e-230 794.3
Chy08g01078 . 1 373 Core DNA Replication Machinery Family AT5G26680 85.6 1.4e-182 636.0
Chy06g00300 . 1 1095 Core DNA Replication Machinery Family AT1G08840 52.9 2.9e-298 1021.5
Chy11g00843 . 2 759 Core DNA Replication Machinery Family AT1G08130 69.2 5.4e-297 1016.9
Chy11g00843 . 158 759 Core DNA Replication Machinery Family AT1G49250 69.3 4.9e-243 837.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007427 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 2 1 1 0 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00002 Chy_Chr02 FPKM 50.232605 49.543941 55.544697 56.853981 50.397633 57.06554 54.366184 51.263268 54.154675 66.273468