Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00041 ATGGCGCCGGGCCTCAGAGACCTCCAGCTGGCCCACGTCGCCGCCGATGACCGTCGCCTACCGGCTATTTCTGCGGCTGATGACATCCCCGAAGATCTTGAGGATGTGCGTTTGCTTGATTCGTACGAGAGGCAGGAAGAGAATTTGGGTCAAATTCGGGATAGTATGAAGAGGGTTCAGGTCACAGTTTCTGGGATGACTTGCGCTGCTTGTTCTAATTCCGTGGAGGCTGCTCTCAGGGGCGTTAATGGCGTTTTGATGGCTTCCGTTGCATTGCTTCAGAACAGAGCTGACGTGGTGTTTGATCCCAGCTTGGTTAAGGAGGAGGACATCAAGGAAGCAATCGAAGATGCTGGATTTGAGGCTGAGATTATACCTGAAACCACTTCAGTTGGAAAGAAGTCGCATGGAACACTGGTGGGTCAATTTACCATAGGTGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAAGGCATATTAAAAGATCTTCCTGGTGTTAGAAGAGCAGTAGTTGCTTTGGCCACATCGTTGGGAGAAGTTGAATATGATCCAGCAATAACCAGTAAAGACGATATAGTTAACGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGCGAGCAAGATAAAATTTTACTCACGGTTGCAGGCATTGCTGGTGAGGTTGATGTACAGTTTTTGGAAGCCATACTTAGTAACTTGAAAGGGGTGAAACGGTTTCTTTTTGACAGTACATCAGGAAAACTTGAAATTATTTTTGACCCAGAAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGAAAATTTAAACTGCATGTTACAAGCCCTTACTCAAGGTTAACATCTAAAGATGTTGAAGAGGCTAACAACATGTTTCGGCTTTTTATCTCCAGTCTATTTCTCAGTGTGCTCATCTTTCTCCAAAGAGTAATATGTCCTCACATTCCTTTAATCTACTCCTTGTTACTCTGGCGCTGTGGGCCCTTCCTCATGGATGATTGGTTAAAGTGGGCATTGGTGACTGTTGTGCAATTTGTCATTGGAAAGCGCTTTTATGTTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAACTAACATGGATGTCTTGGTTGCTTTGGGTACTACGGCCTCTTATGTCTATTCTGTTTGTGCACTTCTCTATGGTGCAGTCACTGGATTCTGGTCTCCGACGTATTTTGAAACAAGTGCTATGTTGATAACTTTTGTATTATTGGGAAAGTATTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAAAAGTTGGTAGAACTTGCTCCTGCAACTGCTTTACTGCTTATCCGAGATAAAGGTGGGAATCTTATAGAAGAAAGGGAGATCGATGCTCTGTTAATTCAACCTGGAGATGTGTTGAAGGTTCTTCCTGGTACAAAAATTCCAGCGGATGGTGTTGTGGTTTGGGGTTCAAGTTATGTTAATGAGAGTATGGTTACTGGAGAATCTATACCTGTATTGAAGGAGGTTAGCTCGAACGTTATTGGTGGTACAATTAATTTTCATGGAGCCCTTCACATTCGAGCAACAAAAGTAGGGTCTGATGCAGTTTTGAACCAGATTATCAGTTTGGTTGAGACAGCTCAGATGTCTAAAGCCCCCATTCAGAAATTTGCTGACTTTGTAGCAAGCATATTTGTTCCAACCGTCGTTGCTATGGCATTATGTACCTTATTTGGTTGGTACGTTGGAGGAATCCTTGGGGCTTATCCTGCTGAATGGCTCCCAGAAAATGGAAATTACTTTGTATTTTCCCTCATGTTCGCAATAGCAGTGGTAGTTATTGCATGTCCTTGTGCACTAGGCTTGGCCACACCTACTGCTGTCATGGTTGCTACAGGAGTTGGCGCCAGCAATGGTGTCTTGATCAAAGGAGGAGATGCTTTGGAGAGGGCCCAAAAGGTTAAGTACGTGATTTTTGATAAAACAGGCACACTAACCCAAGGGAAAGCGACCGTTACTACGGCCAAAGTTTTCACAGAAATTTCTCGAGGAGATTTTCTTAAGTTGGTTGCTTCAGCAGAGGCTAGCAGTGAACACCCACTGGGAAAAGCTATAGTTGAGTATGCACGTCATTTCCATTTCTTTGATGAGCCTTCTGCCACCAAAAATGTGGAAAATCAAAGTAAAGAGTCTTCTGGATGGCTTTTTGATGTCACAGATTTCTCTGCATTGCCAGGCCAAGGCATCCAGTGCACTATTGAGGGAAAAAGGATTCTGGTTGGCAACAGGAAGTTGATGAATGAAAGTGGAATATCCATAGCACCTCATGTAGATAATTTCGTTATAGAGCTTGAAGAAAGTGCAAAGACAGGCATTCTTGTTGCATGTGATGACAACTTAATTGGAGTTGTGGGAATAGCAGATCCACTGAAGCGAGAAGCTGCAGTTGTTGTTGAGGGTCTTGTAAAAATGGGAGTATCTCCAGTCATGGTTACAGGGGATAATTGGAGAACAGCTCGAGCTGTCGCCAAAGAGCTTGGTATACAAGATGTGAGGGCAGAAGTAATGCCAGCAGGAAAAGCCGAAGTCATCCAAAACTTCCAAAAGGATGGAAGCACAGTTGCAATGGTAGGCGATGGTATCAATGACTCGCCTGCTCTAGCTGCTTCTGACATTGGAATCGCAATTGGTGCTGGAACTGATATTGCCATTGAGGCAGCCGACTTCGTCTTGATGAGAAATAATTTAGAAGATGTAATTACAGCCATCGATCTCTCAAGGAAGACTTTCAATCGGATTCGATTGAATTACGTGTTTGCAATGGCCTACAATGTAATAGCAATTCCTATTGCTGCCGGAGTCTTCTTTCCTTCTTTGGGGGTTAAATTGCCTCCATGGGCAGCCGGTGCCTGCATGGCTTTGTCATCGAAGGAGGAATTGGGAAAGTTACCAACAGCAACCTCTAAGAAAAACAAAAACAAAAACAAGAAGATTTGTTTTGACGATCAATGGGGCTCCTCGTTCTACGGCCACCACTCCCACGGCGGCGCCTCCACCTCTTCCGCCGTCGCCCACCACGGCCCCAACACTAACAACTCCAACTCCATTTCCAAGCCCCGCCGCCGCTCCCGGGCTTCCCGGAAAGCCCCGACAACTCTCCTCAACGCCAGCACCTCCAACTTCAGGGACTTGGTGCAGCAGTTCACTGGGTTTCATGCCGCCGGCGCCTCCTTGCCTTTGGGCAGCCATAAGGGTCCGGTCAACCTTAGCTTCGGCCAGGGTGGAGATGATCACCTTCGTAACAACCACCCTTCTGTTATGCTCCCTTTCTCCGACGGCGGCCTTCTTCAGCGCCGACAGCAGGCGACGCCGGAGCACCGGTTTCCTGTCCCGGCGGAAAGTAGTGGGTTTTCAGTGGCGGGGGCGGATCAATTGATGGAAATTCAAAATCTGATTGATGAGGATTTGAGTTACGATCTGCAGGAATTGGGGATGGAGTTTTCTTCTTCCAGTGGAAATGGGAATTACGGCGGTGGATACTTCCATTGA 3561 46.11 MAPGLRDLQLAHVAADDRRLPAISAADDIPEDLEDVRLLDSYERQEENLGQIRDSMKRVQVTVSGMTCAACSNSVEAALRGVNGVLMASVALLQNRADVVFDPSLVKEEDIKEAIEDAGFEAEIIPETTSVGKKSHGTLVGQFTIGGMTCAACVNSVEGILKDLPGVRRAVVALATSLGEVEYDPAITSKDDIVNAIEDAGFEASFVQSSEQDKILLTVAGIAGEVDVQFLEAILSNLKGVKRFLFDSTSGKLEIIFDPEVVGPRSLVDEIEGRSNRKFKLHVTSPYSRLTSKDVEEANNMFRLFISSLFLSVLIFLQRVICPHIPLIYSLLLWRCGPFLMDDWLKWALVTVVQFVIGKRFYVAAARALRNGSTNMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKGGNLIEEREIDALLIQPGDVLKVLPGTKIPADGVVVWGSSYVNESMVTGESIPVLKEVSSNVIGGTINFHGALHIRATKVGSDAVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAMALCTLFGWYVGGILGAYPAEWLPENGNYFVFSLMFAIAVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKVFTEISRGDFLKLVASAEASSEHPLGKAIVEYARHFHFFDEPSATKNVENQSKESSGWLFDVTDFSALPGQGIQCTIEGKRILVGNRKLMNESGISIAPHVDNFVIELEESAKTGILVACDDNLIGVVGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKELGIQDVRAEVMPAGKAEVIQNFQKDGSTVAMVGDGINDSPALAASDIGIAIGAGTDIAIEAADFVLMRNNLEDVITAIDLSRKTFNRIRLNYVFAMAYNVIAIPIAAGVFFPSLGVKLPPWAAGACMALSSKEELGKLPTATSKKNKNKNKKICFDDQWGSSFYGHHSHGGASTSSAVAHHGPNTNNSNSISKPRRRSRASRKAPTTLLNASTSNFRDLVQQFTGFHAAGASLPLGSHKGPVNLSFGQGGDDHLRNNHPSVMLPFSDGGLLQRRQQATPEHRFPVPAESSGFSVAGADQLMEIQNLIDEDLSYDLQELGMEFSSSSGNGNYGGGYFH* 1187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 294393 306806 + Chy2G023080.1 Chy02g00041 219489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00041 1186 CDD HMA 142 205 IPR006121 GO:0046872
Chy02g00041 1186 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 415 691 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy02g00041 1186 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 740 962 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy02g00041 1186 ProSiteProfiles Heavy-metal-associated domain profile. 58 124 IPR006121 GO:0046872
Chy02g00041 1186 SUPERFAMILY Calcium ATPase, transduction domain A 462 548 IPR008250 -
Chy02g00041 1186 ProSitePatterns E1-E2 ATPases phosphorylation site. 664 670 IPR018303 -
Chy02g00041 1186 Gene3D - 629 938 IPR023214 -
Chy02g00041 1186 ProSiteProfiles Heavy-metal-associated domain profile. 214 272 IPR006121 GO:0046872
Chy02g00041 1186 SFLD C1.7: P-type atpase like 644 933 - -
Chy02g00041 1186 MobiDBLite consensus disorder prediction 1019 1043 - -
Chy02g00041 1186 Gene3D - 56 128 - -
Chy02g00041 1186 SUPERFAMILY Calcium ATPase, transmembrane domain M 399 966 IPR023298 -
Chy02g00041 1186 Pfam E1-E2 ATPase 443 640 - -
Chy02g00041 1186 SFLD p-type atpase 644 933 IPR044492 -
Chy02g00041 1186 PRINTS P-type cation-transporting ATPase superfamily signature 806 817 - -
Chy02g00041 1186 PRINTS P-type cation-transporting ATPase superfamily signature 498 512 - -
Chy02g00041 1186 PRINTS P-type cation-transporting ATPase superfamily signature 662 676 - -
Chy02g00041 1186 PRINTS P-type cation-transporting ATPase superfamily signature 828 838 - -
Chy02g00041 1186 PRINTS P-type cation-transporting ATPase superfamily signature 904 916 - -
Chy02g00041 1186 PRINTS P-type cation-transporting ATPase superfamily signature 881 900 - -
Chy02g00041 1186 SUPERFAMILY HMA, heavy metal-associated domain 140 210 IPR036163 GO:0046872
Chy02g00041 1186 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 376 980 IPR027256 GO:0006812|GO:0016021|GO:0019829
Chy02g00041 1186 PANTHER HEAVY METAL P-TYPE ATPASE 27 980 - -
Chy02g00041 1186 ProSitePatterns Heavy-metal-associated domain. 63 93 IPR017969 GO:0046872
Chy02g00041 1186 SUPERFAMILY HMA, heavy metal-associated domain 210 273 IPR036163 GO:0046872
Chy02g00041 1186 TIGRFAM TIGR00003: copper ion binding protein 59 122 IPR006122 GO:0005507
Chy02g00041 1186 TIGRFAM TIGR00003: copper ion binding protein 142 204 IPR006122 GO:0005507
Chy02g00041 1186 MobiDBLite consensus disorder prediction 1019 1056 - -
Chy02g00041 1186 ProSiteProfiles Heavy-metal-associated domain profile. 140 206 IPR006121 GO:0046872
Chy02g00041 1186 Pfam VQ motif 1053 1078 IPR008889 -
Chy02g00041 1186 Pfam Heavy-metal-associated domain 143 203 IPR006121 GO:0046872
Chy02g00041 1186 Pfam Heavy-metal-associated domain 61 121 IPR006121 GO:0046872
Chy02g00041 1186 CDD HMA 60 123 IPR006121 GO:0046872
Chy02g00041 1186 Gene3D - 430 552 - -
Chy02g00041 1186 SUPERFAMILY HAD-like 661 980 IPR036412 -
Chy02g00041 1186 PRINTS H+-transporting ATPase (proton pump) signature 853 869 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy02g00041 1186 PRINTS H+-transporting ATPase (proton pump) signature 881 897 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy02g00041 1186 PRINTS H+-transporting ATPase (proton pump) signature 912 937 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy02g00041 1186 CDD P-type_ATPase_Cu-like 303 980 - -
Chy02g00041 1186 ProSitePatterns Heavy-metal-associated domain. 145 174 IPR017969 GO:0046872
Chy02g00041 1186 SUPERFAMILY HMA, heavy metal-associated domain 53 126 IPR036163 GO:0046872
Chy02g00041 1186 Gene3D - 141 206 - -
Chy02g00041 1186 Gene3D - 669 761 IPR023299 GO:0000166
Chy02g00041 1186 Gene3D - 762 812 IPR023299 GO:0000166
Chy02g00041 1186 Pfam haloacid dehalogenase-like hydrolase 658 895 - -
Chy02g00041 1186 PANTHER ATP7, ISOFORM B 27 980 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00041 Chy-Chr2:294393 Chy08g00480 Chy-Chr8:11807453 4.65E-15 dispersed
Chy02g00041 Chy-Chr2:294393 Chy02g02243 Chy-Chr2:26524277 2.85E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00041 K17686 - csv:101205642 1848.56