Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00062 ATGCTTCAGATCTCTCCTTCACCCAACAAATTCCAAACCATTTCTTCACTTACGAATAATTCTCCACCTCCTTCTAATTTCTTAATTTCAAATCATTCTCCTACCACCACTACTACTCCACTGCATCCTGATCATCACCTTCATCATTTTCTTCACCATCATGATCATAATAATAATAATAACAATAATACCTCCTCCGCCCTTCACATCTCTTCTCCTCGGAATCCCCCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAGGTGGTTTGTGTTCCAGCTCCAGTGGCTGCCAGTAGTAGACCAAATGGGGAAGTGATTCCTTCTGATCTTTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGTTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAAGGATGTTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGTTGGTGATTACTTACACATCTGAACACAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGCTCTTCAAGATCATCTCAACAATCATCAAAAAACAACACTTCTACTATTACTACTACGTCTACTACAACACAACCCAATTCTTCAAAATTAGTCCATCATAAAAATAAACAAGAAGTTCAAGAAGAAGAAGAAGAAGATCATGAAAACAACAACGATGGAACGACAATGACATTATTATCATCAACAGCAGCAGTAGATGAAGAAGCATCAAATAAGAATAATAGTAATGTTAAGGAAGAGGAGATGATTGAGAATGAATTGATGATGAGTAGTACTAGTGAAGGAGGGTTAATTGATGAAGATCATGATTTCTTTGCAGATTTGGAAGAATTAGAAATCGACCCATTAACTCTCTTGTTCAATACTACTACTACTACACAACAACAACAACAACATCAACAACCACCTCACAAATTAGAGCAAATAATCAAAGGATCAGCTGCAGCTGCCTGCTTACACGACGTCGTTCCATTCAATCATCTTTTTGATTGGCCTCCTCCACCTCACCAGGAACAACCACCACCGAGTTCTCCTACCAACAGAGGTTTTTATTAA 1086 39.5 MLQISPSPNKFQTISSLTNNSPPPSNFLISNHSPTTTTTPLHPDHHLHHFLHHHDHNNNNNNNTSSALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSSQQSSKNNTSTITTTSTTTQPNSSKLVHHKNKQEVQEEEEEDHENNNDGTTMTLLSSTAAVDEEASNKNNSNVKEEEMIENELMMSSTSEGGLIDEDHDFFADLEELEIDPLTLLFNTTTTTQQQQQHQQPPHKLEQIIKGSAAAACLHDVVPFNHLFDWPPPPHQEQPPPSSPTNRGFY* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 462320 464829 + Chy2G023290.1 Chy02g00062 219510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00062 361 Gene3D WRKY domain 82 162 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy02g00062 361 MobiDBLite consensus disorder prediction 161 207 - -
Chy02g00062 361 MobiDBLite consensus disorder prediction 339 361 - -
Chy02g00062 361 SUPERFAMILY WRKY DNA-binding domain 107 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy02g00062 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 311 IPR044810 GO:0003700
Chy02g00062 361 MobiDBLite consensus disorder prediction 161 232 - -
Chy02g00062 361 ProSiteProfiles WRKY domain profile. 103 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy02g00062 361 Coils Coil 207 227 - -
Chy02g00062 361 MobiDBLite consensus disorder prediction 57 72 - -
Chy02g00062 361 MobiDBLite consensus disorder prediction 1 87 - -
Chy02g00062 361 Pfam WRKY DNA -binding domain 110 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy02g00062 361 MobiDBLite consensus disorder prediction 1 41 - -
Chy02g00062 361 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 15 311 - -
Chy02g00062 361 SMART WRKY_cls 108 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00328 Chy-Chr1:2345462 Chy02g00062 Chy-Chr2:462320 2.38E-35 dispersed
Chy02g00062 Chy-Chr2:462320 Chy12g00450 Chy-Chr12:5585747 1.91E-64 dispersed
Chy02g00062 Chy-Chr2:462320 Chy06g00146 Chy-Chr6:929471 3.08E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17406 PF03106 WRKY 1.80E-25 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00062 - - csv:101209169 555.829