Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy02g00080 | ATGTCTCGAAGATCGACTAGGTTAGTGGAAAAGGCGAATGTTGTATATGAGGGAAACCTTAAAGCTCATAGAAGGAGTCAAAAGTCGACACAAAATAATGAGGTTAAGCTAAATGAAGTTGTGTTTCCTCCATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACATACAATAAGATGTCAATGGTCACAAGAGCAACTGCTTCGAAGAATCAGGGGATCAACAAAAAAGGGAGTGGGAGATTAAGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGCGGTGAATTTGAGGTTGGGAACGATGTTTATGTGAAGAGGAGAGAAGGTGCAAGCTCTGATGATGAAGATCCTGAAGTTGAGGAGTGTAGAGTGTGCTTTAAATCTGGAAACGCTATAATGATAGAGTGTGATGACTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCTCCAATGAAGGTGATTCCTGAGGGAGATTGGATTTGTGGGTTTTGTGAGGCTGCCAAATTGGGCAAAGAGGTTCAATTGCCAAAGCCACCGGAGGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTAGCTGGCGATTTATGGGCTGCTCACATTGAAAGTATATGGAAAGAAGTAACGGGTAACCATCATTGTAAGATATTGAGATGGAATCGCTTCTTAGCTGTGTGA | 690 | 41.59 | MSRRSTRLVEKANVVYEGNLKAHRRSQKSTQNNEVKLNEVVFPPSFEQLEGKKRKTYNKMSMVTRATASKNQGINKKGSGRLRKRVYYQKVVFDGGEFEVGNDVYVKRREGASSDDEDPEVEECRVCFKSGNAIMIECDDCLGGFHLKCLKPPMKVIPEGDWICGFCEAAKLGKEVQLPKPPEGKKRVRTMREKLLAGDLWAAHIESIWKEVTGNHHCKILRWNRFLAV* | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 528578 | 529358 | - | Chy2G023470.1 | Chy02g00080 | 219528 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy02g00080 | 229 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 189 | IPR013083 | - | |
| Chy02g00080 | 229 | Gene3D | - | 51 | 226 | IPR043151 | - | |
| Chy02g00080 | 229 | SMART | PHD_3 | 123 | 168 | IPR001965 | - | |
| Chy02g00080 | 229 | ProSiteProfiles | Zinc finger PHD-type profile. | 121 | 170 | IPR019787 | - | |
| Chy02g00080 | 229 | SUPERFAMILY | FYVE/PHD zinc finger | 112 | 173 | IPR011011 | - | |
| Chy02g00080 | 229 | PANTHER | ORIGIN RECOGNITION COMPLEX SUBUNIT 1 | 56 | 218 | IPR020793 | - | |
| Chy02g00080 | 229 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 56 | 218 | - | - | |
| Chy02g00080 | 229 | Pfam | PHD-finger | 124 | 169 | IPR019787 | - | |
| Chy02g00080 | 229 | ProSitePatterns | Zinc finger PHD-type signature. | 124 | 167 | IPR019786 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy02g00080 | Chy-Chr2:528578 | Chy04g00760 | Chy-Chr4:9669583 | 6.83E-133 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 17407 | PF00628 | PHD | 3.60E-09 | CL0390 | Chy | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy02g00080 | K02603 | - | csv:101210651 | 437.958 |