Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00080 ATGTCTCGAAGATCGACTAGGTTAGTGGAAAAGGCGAATGTTGTATATGAGGGAAACCTTAAAGCTCATAGAAGGAGTCAAAAGTCGACACAAAATAATGAGGTTAAGCTAAATGAAGTTGTGTTTCCTCCATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACATACAATAAGATGTCAATGGTCACAAGAGCAACTGCTTCGAAGAATCAGGGGATCAACAAAAAAGGGAGTGGGAGATTAAGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGCGGTGAATTTGAGGTTGGGAACGATGTTTATGTGAAGAGGAGAGAAGGTGCAAGCTCTGATGATGAAGATCCTGAAGTTGAGGAGTGTAGAGTGTGCTTTAAATCTGGAAACGCTATAATGATAGAGTGTGATGACTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCTCCAATGAAGGTGATTCCTGAGGGAGATTGGATTTGTGGGTTTTGTGAGGCTGCCAAATTGGGCAAAGAGGTTCAATTGCCAAAGCCACCGGAGGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTAGCTGGCGATTTATGGGCTGCTCACATTGAAAGTATATGGAAAGAAGTAACGGGTAACCATCATTGTAAGATATTGAGATGGAATCGCTTCTTAGCTGTGTGA 690 41.59 MSRRSTRLVEKANVVYEGNLKAHRRSQKSTQNNEVKLNEVVFPPSFEQLEGKKRKTYNKMSMVTRATASKNQGINKKGSGRLRKRVYYQKVVFDGGEFEVGNDVYVKRREGASSDDEDPEVEECRVCFKSGNAIMIECDDCLGGFHLKCLKPPMKVIPEGDWICGFCEAAKLGKEVQLPKPPEGKKRVRTMREKLLAGDLWAAHIESIWKEVTGNHHCKILRWNRFLAV* 230
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 528578 529358 - Chy2G023470.1 Chy02g00080 219528
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00080 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 189 IPR013083 -
Chy02g00080 229 Gene3D - 51 226 IPR043151 -
Chy02g00080 229 SMART PHD_3 123 168 IPR001965 -
Chy02g00080 229 ProSiteProfiles Zinc finger PHD-type profile. 121 170 IPR019787 -
Chy02g00080 229 SUPERFAMILY FYVE/PHD zinc finger 112 173 IPR011011 -
Chy02g00080 229 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 56 218 IPR020793 -
Chy02g00080 229 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 56 218 - -
Chy02g00080 229 Pfam PHD-finger 124 169 IPR019787 -
Chy02g00080 229 ProSitePatterns Zinc finger PHD-type signature. 124 167 IPR019786 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00080 Chy-Chr2:528578 Chy04g00760 Chy-Chr4:9669583 6.83E-133 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17407 PF00628 PHD 3.60E-09 CL0390 Chy TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00080 K02603 - csv:101210651 437.958