Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00089 ATGAATAATCGTGCAATGGAACTTGGGAGGCCTGGCTCAGGTGGTATCCTTACTGAATTCGAGAATCAAACTATATATGAACCGATTAAACTATCTTCTGCAAATGCATATATTGTATCTATTGTGGCCTTGAAAATAATGTTAGGCCTTTTCTGGTCATGTTCAGGCAAAAGAAGATTAAAGGATCTATTGCTTTTAAAGGATAATCGCTTTTGTGCAGATTGTCGCGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGCGTTCATAGAAGCCTCGGTTCACATATATCTAAGGTGTTATCAGTGACTCTGGATGAATGGAATGATGATGAAATTGATGCAATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTTTATTCCTGAGGGATTTTCAAAACCTGGACCTGATGCCACCCACGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCGTCCAACTCAGACAAAAGCAACATCCAAGCAAGCTTTTCTTCAAAGATCATGAACAGTTTTCGTTCGAATTCTTCACAAAAATCACAATCACAGCAAGGTATGGTAGAGTATATTGGATTATTGAAGGTCAAAGTGATTAAAGGGACAAACTTAGCTATCAGAGATATGATGTCGAGCGATCCTTATGTAGTCATGACTCTCGGTAAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTAACACTATCTGTACCTCAAGGTTTTGGATCTATAAAGTTGGAAGTATACGACTATGACACATTTTCAGCCGACGACATAATGGGAGAAGCAGAGATTGATCTCCAACCCTTGATAACATCCGCAATGGCATTTGGAGATGCTGGAATGTTCTCAAACATGCAAATTGGTAAATGGCTGAAATCGCACGACAACGCTCTCATGAGCGATAGCACTGTTAATATTGTTGATGGAAAGGTGAAACAAGAGATAGCTCTCAAGCTTCAAAATGTGGAATCAGGTGAACTAGATCTAGAGCTAGAATGGATGGCTCTTGAACAATAG 1128 39.18 MNNRAMELGRPGSGGILTEFENQTIYEPIKLSSANAYIVSIVALKIMLGLFWSCSGKRRLKDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAFIPEGFSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNSDKSNIQASFSSKIMNSFRSNSSQKSQSQQGMVEYIGLLKVKVIKGTNLAIRDMMSSDPYVVMTLGKQTVQTSVVRSNLNPVWNEELTLSVPQGFGSIKLEVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALMSDSTVNIVDGKVKQEIALKLQNVESGELDLELEWMALEQ* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 571771 574863 - Chy2G023560.1 Chy02g00089 219537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00089 375 ProSiteProfiles C2 domain profile. 201 316 IPR000008 -
Chy02g00089 375 CDD ArfGap 69 166 - -
Chy02g00089 375 CDD C2_ArfGAP 218 362 - -
Chy02g00089 375 ProSiteProfiles ARF GTPase-activating proteins domain profile. 57 185 IPR001164 GO:0005096
Chy02g00089 375 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 53 375 - -
Chy02g00089 375 SUPERFAMILY ArfGap/RecO-like zinc finger 57 174 IPR037278 -
Chy02g00089 375 SMART arf_gap_3 57 179 IPR001164 GO:0005096
Chy02g00089 375 Pfam C2 domain 220 309 IPR000008 -
Chy02g00089 375 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 53 375 IPR044518 GO:0005096|GO:0005543
Chy02g00089 375 Pfam Putative GTPase activating protein for Arf 58 173 IPR001164 GO:0005096
Chy02g00089 375 PRINTS HIV Rev interacting protein signature 88 105 IPR001164 GO:0005096
Chy02g00089 375 PRINTS HIV Rev interacting protein signature 109 130 IPR001164 GO:0005096
Chy02g00089 375 PRINTS HIV Rev interacting protein signature 69 88 IPR001164 GO:0005096
Chy02g00089 375 SMART C2_3c 220 315 IPR000008 -
Chy02g00089 375 Gene3D C2 domain 216 374 IPR035892 -
Chy02g00089 375 Gene3D Arf GTPase activating protein 53 177 IPR038508 -
Chy02g00089 375 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 219 363 IPR035892 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00089 Chy12g00386 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00089 Chy-Chr2:571771 Chy10g01357 Chy-Chr10:17812983 1.92E-114 dispersed
Chy12g00386 Chy-Chr12:4545430 Chy02g00089 Chy-Chr2:571771 1.80E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00089 K12486 - csv:101218116 616.69