Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00093 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAGCGAAAGTACTCTGAATCTCAGAATCATTCTTCATCGGTCATAAATGGACTAAATCAATCAACCCCAAATCAGTATGTAGCGTCTCCCCAAGTTGGAGCAGGACATTCTATGGTACCCCCGGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGGATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGCAGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATCTACACGCATTGAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAAAATCGTCAAAATGAGGTGGCATCGGGTGATAAATCACAGCCAAATATAAATCTGAATTCTGACAGAAGTGATCTTGCTTCTTCAGAGAACTGA 609 42.86 MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQSTPNQYVASPQVGAGHSMVPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENRQNEVASGDKSQPNINLNSDRSDLASSEN* 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 587296 590696 + Chy2G023600.1 Chy02g00093 219541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00093 202 MobiDBLite consensus disorder prediction 1 51 - -
Chy02g00093 202 MobiDBLite consensus disorder prediction 23 47 - -
Chy02g00093 202 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Chy02g00093 202 MobiDBLite consensus disorder prediction 160 202 - -
Chy02g00093 202 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Chy02g00093 202 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Chy02g00093 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 183 - -
Chy02g00093 202 Gene3D - 108 169 - -
Chy02g00093 202 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 183 IPR001289 GO:0003700|GO:0006355
Chy02g00093 202 MobiDBLite consensus disorder prediction 168 202 - -
Chy02g00093 202 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Chy02g00093 202 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Chy02g00093 202 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00093 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101205549 389.037
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00093 Chy-Chr2:587296 Chy05g00137 Chy-Chr5:1065847 1.20E-39 dispersed
Chy02g00093 Chy-Chr2:587296 Chy01g01861 Chy-Chr1:24038802 2.14E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g00137 CCT,ECH 105 342 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.3 1.6e-47 186.8
Chy02g01451 CCT,ECH 7 245 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.6 3.3e-45 179.1
Chy02g00093 . 1 200 CCAAT-HAP2 Transcription Factor Family AT1G30500 51.4 1.9e-46 182.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17408 PF02045 CBFB_NFYA 4.10E-26 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00093 Chy_Chr02 FPKM 3.497154 3.257146 0.349895 0.377922 9.935094 10.968145 9.070342 0.0 0.0 0.298711