Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00093 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGAGCAGCGAAAGTACTCTGAATCTCAGAATCATTCTTCATCGGTCATAAATGGACTAAATCAATCAACCCCAAATCAGTATGTAGCGTCTCCCCAAGTTGGAGCAGGACATTCTATGGTACCCCCGGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGGATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGCAGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATCTACACGCATTGAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAAAATCGTCAAAATGAGGTGGCATCGGGTGATAAATCACAGCCAAATATAAATCTGAATTCTGACAGAAGTGATCTTGCTTCTTCAGAGAACTGA 609 42.86 MTSSVHDYSDNGEADEQRKYSESQNHSSSVINGLNQSTPNQYVASPQVGAGHSMVPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENRQNEVASGDKSQPNINLNSDRSDLASSEN* 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 587296 590696 + Chy2G023600.1 Chy02g00093 219541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00093 202 MobiDBLite consensus disorder prediction 1 51 - -
Chy02g00093 202 MobiDBLite consensus disorder prediction 23 47 - -
Chy02g00093 202 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Chy02g00093 202 MobiDBLite consensus disorder prediction 160 202 - -
Chy02g00093 202 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Chy02g00093 202 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Chy02g00093 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 183 - -
Chy02g00093 202 Gene3D - 108 169 - -
Chy02g00093 202 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 183 IPR001289 GO:0003700|GO:0006355
Chy02g00093 202 MobiDBLite consensus disorder prediction 168 202 - -
Chy02g00093 202 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Chy02g00093 202 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Chy02g00093 202 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00093 Chy-Chr2:587296 Chy05g00137 Chy-Chr5:1065847 1.20E-39 dispersed
Chy02g00093 Chy-Chr2:587296 Chy01g01861 Chy-Chr1:24038802 2.14E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17408 PF02045 CBFB_NFYA 4.10E-26 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00093 K08064 - csv:101205549 389.037