Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00116 ATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCTCCCGAAGGGGAGAGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCTGGCCCACTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTTGATGCCCATATACCAAGTTATCCAAGCTTGCCGCCACAGCTAATCTGCCAGCTTCACAATGTTACAATGCATGCAGATATTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACTAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCAGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAGCAGCCTCCTGCACAGGAGTTAATTGCAAGGGATCTGCATGATAATGAGTGGAAATTTAGGCATATCTTTCGTGGCCAACCGAAAAGGCATCTCCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCGGTTATCTTTATTTGGAATGAAAAGAATCAATTACTGTTGGGGATCCGTCGAGCTAATCGACCACAAACAGTGATGCCCTCGTCGGTTCTGTCCAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGTCGGTTCACAATATTTTATAATCCAAGGGCTAGCCCATCAGAGTTCATCATACCTCTGGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCTGTTGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGTGTTCGTCGTTACATGGGCACTATTACTGGTATCAGTGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGCCCCTGGCCAACTGGATTTCCCTCTTTCCATGGTCTTAAAGAGGACGATCTGGGATTAAATTCTCAACTAATGTGGCTTCGGGGAGACGGTCTAGATCGTGGAATTCAACCTCTGAACTTCCCTGGAATTGGAGTTGCACCATGGATGCAGCCAAGGCTTGATGCTTCTATGGTCGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACCGTAGATCCTGCTAAGGCGCAGGCTGCTTCGCTTCTTCAATTCCAACAAACTCAAAATCTTCCCAACAGGTCTGCTAATTTCATGCCACCTCAGATGTTGCAGCAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGCTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCACCAGCAGCAGCAGCAGCAACAACAACAACAGCAACAGCAACCACAACAGCAAGTGTTTGATCACCATCAAATTCCAAGTCCCATGTCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAAGCCCAATCCCTACAAACTATTCCTCCATTATGTCGGCAACAGAGTTTTTCTGATTCAAATCCCAACCATGTGACGAGTCCCATCATTTCACCCTTGCACAGCCTATTAGGTGGTTCATTTTCACAAGATGAATCATCTCAGATGCTTAACCTTCCTCGAACCAATCCCATGATACATTCATCTACATGGCCGTCAAAGCGAGCTGCAATCGATCCTCTTCTCTCTTCAGGAAATTCTCAGTTTGTTCTTCCCCAAGGGGAAAATATAAGGACAGCTCCTGCTAATATCTCTCAGAATGCTATTTCATTGCCGCCTTTTCCTGGGAGAGAGTGTTCATTAGATCAAGGGAATGTCGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCTTCGAATTATGTGAATACTGCTGGTACCAACTTCTCTGCCAATCCAACTGGGACAGGGACACCTTCCAATTGCAATGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACTGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTTGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTTGCTCACATGTTCGGCCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAGTTTGTCAACAGCGTGTGGTGTATCAAAATACTATCACCACAGGAAGTGCAGGAGATGGGCAAACGTGGCCTAGAGCTCTTGAACTCTGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTATGCCAACAGACAGGAGTCATCCAGAAATATGAGTTCTGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA 2745 46.89 MRLSTAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRSANFMPPQMLQQPQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTAVLQQEIKHQTFNNHQQQQQQQQQQQQQPQQQVFDHHQIPSPMSTMSQFSSASQSQAQSLQTIPPLCRQQSFSDSNPNHVTSPIISPLHSLLGGSFSQDESSQMLNLPRTNPMIHSSTWPSKRAAIDPLLSSGNSQFVLPQGENIRTAPANISQNAISLPPFPGRECSLDQGNVDPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGTNFSANPTGTGTPSNCNEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNMSSGITSVGSLEY* 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 835963 840971 + Chy2G023830.1 Chy02g00116 219564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00116 914 MobiDBLite consensus disorder prediction 474 581 - -
Chy02g00116 914 PANTHER AUXIN RESPONSE FACTOR 6 1 892 - -
Chy02g00116 914 SMART B3_2 127 229 IPR003340 GO:0003677
Chy02g00116 914 Gene3D - 125 228 IPR015300 -
Chy02g00116 914 MobiDBLite consensus disorder prediction 892 914 - -
Chy02g00116 914 SUPERFAMILY CAD & PB1 domains 772 855 - -
Chy02g00116 914 MobiDBLite consensus disorder prediction 499 581 - -
Chy02g00116 914 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Chy02g00116 914 Pfam AUX/IAA family 769 869 IPR033389 -
Chy02g00116 914 CDD B3_DNA 126 227 IPR003340 GO:0003677
Chy02g00116 914 ProSiteProfiles PB1 domain profile. 780 864 IPR000270 GO:0005515
Chy02g00116 914 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Chy02g00116 914 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 892 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy02g00116 914 Gene3D - 291 363 - -
Chy02g00116 914 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Chy02g00116 914 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Chy02g00116 914 Gene3D - 777 869 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00116 Chy-Chr2:835963 Chy05g01480 Chy-Chr5:18553235 1.15E-29 dispersed
Chy04g00433 Chy-Chr4:3874087 Chy02g00116 Chy-Chr2:835963 6.96E-37 transposed
Chy07g01133 Chy-Chr7:16265895 Chy02g00116 Chy-Chr2:835963 5.50E-14 transposed
Chy12g00362 Chy-Chr12:3963674 Chy02g00116 Chy-Chr2:835963 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17411 PF02309 AUX_IAA 2.20E-07 CL0072 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00116 - - csv:101210406 1723.75