Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00156 ATGGACGTTGGAGAAGAAATTAGGGCAGCTCACAAGCGAGATTTCTTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGAAGAGATCAAAGCCATGATTAATCATAAGCGACATCGCCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGTCCCAGGGTGCTTAGGCATCCCAGTGAGTACATTCAGCCATTCTGCGATGCAGTTACAGAAACTGCTCGCAGTATTGACCCAAAATACCTCAAGGAAGGAGAACAGGTTATGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGTCGTGTCACTCCCAGGGATCTTCTCTCTCAGTTCATTGGATCTATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTTCATTTCTGCCCCACAACTGGAGCTTTTACCAGTCGTGAATACCGTGACATTACATCCAATATGGGCTTGCCCACGGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAATATGGCTTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAGAATTCAGCACCTGGTCAGCTTCCACGAACGGTGGATGTCATAGTTGAGGATGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGCAAGGGCAGCTTGAATGGTGTGTTCAGGACTGTGCTTGTTGCAAATAATGTTTCTCTACTAAACAAAGAGGCTAATGCGCCAATATACAGTCCTGAAGACTTGAAGAATATTAAAAAGATAGCTGAAAGAGATGACACATTTGATCTTCTTGGTAACTCTCTTGCACCCTCCATATATGGACATTCATGGATAAAGAAAGCAGTGATACTGTTGATGCTTAGTGGGGTGGAGAAGAACTTGAAGAATGGCACTCACCTAAGAGGCGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCTAAGTCTCAGCTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCCTCTGGCGTTGGGTTAACTGCCGCTGTTACATCTGACCAGGAAACAGGAGAAAGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTTACCATTGCCAAAGCTGGTATTCATGCTTCACTAAATGCTCGGTGCAGCGTGGTAGCAGCTGCAAATCCCATATATGGATCGTATGATCGCTCGTTGACACCGACCAAGAATATTGGTCTTCCTGACTCTTTACTCTCTCGATTTGATCTACTATTTATTGTATTGGATCAAATGGATCCCGATATTGATCGCCATATTTCAGAGCACGTGTTGCGTATGCACCGTTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGATCAATGTATGGAAGAGAGGAAGAAGCTGAAGCGGACACTTCTGTCTTTGTCAAGTATAATAGACTGCTTCATGGGAAGAAGATTGATCGTGGTCGGAAGCGTGATACTCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCTGACCTAACTGATGAGGCCTCTGAGCATATTGCAACAGCTTATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGGGGAACTCTTCCAATTACTGCCAGAACCTTGGAAACCATTATACGACTCTCAACTGCGCATGCAAAACTGAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTGGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAGGGAGAAAGAATTGGAAAGAAAGCGCAGAGCTGAAGATCAAACAGTGGAAAATGACAGACCAGAACGAAGTACCAAAAGAAGAGGGGAGGGCTCAAGGACAGATACCATGGAGATCGATGATCCTCCTGCTGAGCCGGAACTTGATCTGTCTGCAGAAAGGACAGAAGCATTTAATTCTCTTTTTGGTCAGCATATGCGTGCAAACCACCTGGATGTTATATCTATTGCAGATATTGAGAACGTTGTTAATGCAGCAGATAATCGTTACACTGCGGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATACCATGGTGCATATGATATCATGA 2319 43.17 MDVGEEIRAAHKRDFLEFLEQDVGKGIYMEEIKAMINHKRHRLIINISDLHSFRDLGPRVLRHPSEYIQPFCDAVTETARSIDPKYLKEGEQVMVGFEGPFVSRRVTPRDLLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGAFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDVIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSMYGREEEAEADTSVFVKYNRLLHGKKIDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEHIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKELERKRRAEDQTVENDRPERSTKRRGEGSRTDTMEIDDPPAEPELDLSAERTEAFNSLFGQHMRANHLDVISIADIENVVNAADNRYTAAEIMLLLQRLQDDNRVMIADTMVHMIS* 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1125569 1130431 - Chy2G024230.1 Chy02g00156 219604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00156 772 CDD MCM3 292 638 - -
Chy02g00156 772 Gene3D - 109 239 IPR012340 -
Chy02g00156 772 SMART mcm 104 640 IPR031327 GO:0003677|GO:0005524|GO:0032508
Chy02g00156 772 Pfam MCM N-terminal domain 12 89 IPR027925 -
Chy02g00156 772 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Chy02g00156 772 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00156 772 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Chy02g00156 772 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 627 642 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Chy02g00156 772 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Chy02g00156 772 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Chy02g00156 772 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Chy02g00156 772 Gene3D - 135 189 - -
Chy02g00156 772 MobiDBLite consensus disorder prediction 647 702 - -
Chy02g00156 772 Gene3D - 271 661 IPR027417 -
Chy02g00156 772 PANTHER DNA HELICASE 3 764 - -
Chy02g00156 772 Pfam MCM OB domain 109 239 IPR033762 -
Chy02g00156 772 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00156 772 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00156 772 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00156 772 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00156 772 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00156 772 Coils Coil 641 668 - -
Chy02g00156 772 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Chy02g00156 772 Pfam MCM AAA-lid domain 553 636 IPR041562 -
Chy02g00156 772 MobiDBLite consensus disorder prediction 647 693 - -
Chy02g00156 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 652 IPR027417 -
Chy02g00156 772 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 764 IPR031327 GO:0003677|GO:0005524|GO:0032508
Chy02g00156 772 SMART AAA_5 331 484 IPR003593 -
Chy02g00156 772 Gene3D - 5 99 - -
Chy02g00156 772 SUPERFAMILY Nucleic acid-binding proteins 13 257 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01752 Chy-Chr1:23246946 Chy02g00156 Chy-Chr2:1125569 5.92E-113 dispersed
Chy02g00156 Chy-Chr2:1125569 Chy04g01347 Chy-Chr4:20103179 7.36E-107 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00156 K02541 - csv:101210889 1481.85