Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00161 ATGGCGGGACTGAGAAAACTGGCGCGATTGAAACCCATGTTCAATGAAGCATTGGCCGGAACAATTTTTGTAGGGAAGTTGTTCTGTGGCCTTCATGTCGCCAACACTTACATCTGCACAGCCACTTTCACCTACGGTCCCAGCATGCTCCCTACTCTTAACCTAACTGGTGATTTCGTCTTGGCCGAGCGACTCTCCACTCGCTTTGGCAGAGTTGGTGTTGGAGACATTGTCCTCGTTAGATCTCCTGAGAATCCTCGTAAAGTAGTGGGTAAGCGCTTGATTGGAATGGAGGGTGATTCTGTTACCTATGTTGTAGACCCGAAGAACAGTGATTGGAGCGAAACTGTTGTGGTTCCTAAGGGGCATGTTTGGATAGAGGGAGATAATATCTATGATTCGAGAGATTCGAGAAATTTTGGGGCCGTTCCATACGGTCTTCTGCAAGGGAAAATATTTTGGAGGATATGGCCACCAAAGAGTTTTGGACAGTTGGAGAAGAGAAAATCAAACGAGACAGTCTTAAGTTATGCTGATGTCGTCACTCAAGGTCGTCCTTGTCGACATTGGTGA 573 46.77 MAGLRKLARLKPMFNEALAGTIFVGKLFCGLHVANTYICTATFTYGPSMLPTLNLTGDFVLAERLSTRFGRVGVGDIVLVRSPENPRKVVGKRLIGMEGDSVTYVVDPKNSDWSETVVVPKGHVWIEGDNIYDSRDSRNFGAVPYGLLQGKIFWRIWPPKSFGQLEKRKSNETVLSYADVVTQGRPCRHW* 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1153759 1156318 - Chy2G024280.1 Chy02g00161 219609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00161 190 Gene3D Umud Fragment, subunit A 34 172 - -
Chy02g00161 190 Pfam Signal peptidase, peptidase S26 32 104 IPR019533 GO:0004252|GO:0006465
Chy02g00161 190 Pfam Signal peptidase, peptidase S26 113 157 IPR019533 GO:0004252|GO:0006465
Chy02g00161 190 PRINTS Bacterial leader peptidase 1 (S26A) family signature 37 53 IPR000223 GO:0006508|GO:0008236|GO:0016020
Chy02g00161 190 PRINTS Bacterial leader peptidase 1 (S26A) family signature 90 102 IPR000223 GO:0006508|GO:0008236|GO:0016020
Chy02g00161 190 PRINTS Bacterial leader peptidase 1 (S26A) family signature 119 138 IPR000223 GO:0006508|GO:0008236|GO:0016020
Chy02g00161 190 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 4 168 - -
Chy02g00161 190 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 4 168 - -
Chy02g00161 190 SUPERFAMILY LexA/Signal peptidase 36 165 IPR036286 -
Chy02g00161 190 CDD S26_SPase_I 42 152 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00161 Chy-Chr2:1153759 Chy07g01002 Chy-Chr7:14720304 1.77E-61 dispersed
Chy02g00161 Chy-Chr2:1153759 Chy07g00098 Chy-Chr7:873349 5.27E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00161 K09647 - csv:101209167 352.443