Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00166 ATGGCTGCCTCTACAATGGCTCTTTCCTCCCCAACTCTGGCCGGCCAAGCCGTGAAACTCTCCCCCAATGCCCCTGAAATTCAGGGCAATGCAAAATTCACCATGAGGAAGACTGCCAGCAAGTCAGTTTCCTCCGGCAGCCCGTGGTATGGTCCTGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCACCGTCCTACCTTACTGGAGAGTTCCCTGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCTGATCCCGAGACCTTCGCCAAGAACCGTGAGTTGGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGGTGTGTCTTCCCTGAGCTTTTGTCTCGCAATGGTGTGAAGTTTGGTGAAGCTGTTTGGTTCAAGGCTGGATCTCAGATCTTCAGCGAGGGAGGGCTTGACTACTTGGGCAACCCCAGCTTGGTCCATGCTCAGAGCATTTTGGCCATCTGGGCTTGCCAGGTTGTGTTGATGGGTGCCGTCGAGGGTTACCGTATTGCTGGCGGCCCACTCGGAGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTTGACCCATTGGGTTTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGTTGAAGAATGGAAGGTTGGCTATGTTTTCCATGTTTGGATTCTTCGTTCAAGCCATTGTTACTGGAAAGGGTCCTTTGGAAAACTTGGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCATATGCCACAAACTTTGTTCCCGGAAAGTGA 798 53.51 MAASTMALSSPTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1171702 1172499 - Chy2G024330.1 Chy02g00166 219614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00166 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 265 - -
Chy02g00166 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Chy02g00166 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Chy02g00166 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Chy02g00166 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00166 Chy-Chr2:1171702 Chy09g00113 Chy-Chr9:941941 1.36E-65 dispersed
Chy02g00166 Chy-Chr2:1171702 Chy02g00167 Chy-Chr2:1173807 2.73E-160 tandem
Chy01g00514 Chy-Chr1:3707462 Chy02g00166 Chy-Chr2:1171702 6.15E-154 transposed
Chy04g01189 Chy-Chr4:18266412 Chy02g00166 Chy-Chr2:1171702 3.47E-171 transposed
Chy06g01728 Chy-Chr6:20138010 Chy02g00166 Chy-Chr2:1171702 7.57E-121 transposed
Chy07g00435 Chy-Chr7:3334144 Chy02g00166 Chy-Chr2:1171702 7.16E-32 transposed
Chy08g00647 Chy-Chr8:14363437 Chy02g00166 Chy-Chr2:1171702 6.60E-31 transposed
Chy11g01011 Chy-Chr11:14276644 Chy02g00166 Chy-Chr2:1171702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00166 K08912 - csv:101221671 544.658