Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00197 ATGTCCAAGCATTATCAGTCACCACTCACAAGAATGATTAAGGAAGATGGAAAGGGTGAGTTGCAAATAAAGGGGATGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCGCCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATTGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTTAAAAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAATATGCTAACAACAGTGTGAAGGCAACAATTGATAGATATAAGAAGGCATCCTCAGATTCCTCCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTATCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGCTAGGCGAGTCTCTAAGTTCTCTGACTGCAAAAGATCTGAAAGGCCTGGAGACCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTATTTGCTGAAATTGAGTATATGCGGAAAAGGGAAATTGATTTGCACAACAACAATCAGATGCTTCGGGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAGCATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCAATTAGTATAA 789 40.56 MSKHYQSPLTRMIKEDGKGELQIKGMFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLTAKDLKGLETKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQMLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1342093 1348460 - Chy2G024640.1 Chy02g00197 219645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00197 262 ProSiteProfiles MADS-box domain profile. 42 102 IPR002100 GO:0003677|GO:0046983
Chy02g00197 262 ProSiteProfiles K-box domain profile. 128 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy02g00197 262 PANTHER MADS BOX PROTEIN 36 256 - -
Chy02g00197 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 51 98 IPR002100 GO:0003677|GO:0046983
Chy02g00197 262 SUPERFAMILY SRF-like 43 117 IPR036879 GO:0003677|GO:0046983
Chy02g00197 262 CDD MADS_MEF2_like 43 119 IPR033896 GO:0000977|GO:0045944
Chy02g00197 262 PANTHER AGAMOUSB 36 256 - -
Chy02g00197 262 PRINTS MADS domain signature 44 64 IPR002100 GO:0003677|GO:0046983
Chy02g00197 262 PRINTS MADS domain signature 64 79 IPR002100 GO:0003677|GO:0046983
Chy02g00197 262 PRINTS MADS domain signature 79 100 IPR002100 GO:0003677|GO:0046983
Chy02g00197 262 SMART madsneu2 42 101 IPR002100 GO:0003677|GO:0046983
Chy02g00197 262 Pfam K-box region 124 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy02g00197 262 Gene3D - 54 136 IPR036879 GO:0003677|GO:0046983
Chy02g00197 262 Coils Coil 165 185 - -
Chy02g00197 262 ProSitePatterns MADS-box domain signature. 44 98 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00197 Chy12g00045 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00197 Chy-Chr2:1342093 Chy09g00018 Chy-Chr9:204900 7.97E-90 dispersed
Chy04g00443 Chy-Chr4:4033743 Chy02g00197 Chy-Chr2:1342093 2.51E-30 dispersed
Chy07g01765 Chy-Chr7:21246910 Chy02g00197 Chy-Chr2:1342093 6.11E-27 dispersed
Chy11g00034 Chy-Chr11:402805 Chy02g00197 Chy-Chr2:1342093 7.10E-10 dispersed
Chy04g00480 Chy-Chr4:4550807 Chy02g00197 Chy-Chr2:1342093 2.31E-22 transposed
Chy04g01233 Chy-Chr4:18872839 Chy02g00197 Chy-Chr2:1342093 5.77E-40 transposed
Chy08g00183 Chy-Chr8:4250489 Chy02g00197 Chy-Chr2:1342093 5.18E-41 transposed
Chy11g00996 Chy-Chr11:14088961 Chy02g00197 Chy-Chr2:1342093 1.98E-90 wgd
Chy12g00045 Chy-Chr12:397024 Chy02g00197 Chy-Chr2:1342093 3.20E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17417 PF01486 K-box 1.00E-27 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00197 K09264 - csv:101221430 458.759