Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00224 ATGGCCGACCGGCCCGACCCTGACAAGAAAACCGAAACCACCAGGAAAGATATGCCCGCCCTTCTTCTTGGCCGATACGAGATCGGGAAGCTCCTTGGCCATGGCACCTTCGCCAAGGTCTACCATGCCCGAAACATCAAAACCAACGAAAGCGTAGCCATTAAAGTCATCGACAAGGAGAAGATCCTCAAGGGCGGTTTAATCGCTCACATCAAACGCGAGATCTCAATCCTCCGCCGTGTTCGACATCCTAATATTGTGCAACTCTTCGAGGTTATGGCCACTAAGGCCAAGATCTACTTCGTTATGGAATACGTCCGCGGAGGTGAGCTTTTCAAGAAGGTCTCTAAGGGCCGATTGAAGGAAGAGGTCGCACGCAAGTACTTTCAGCAATTAATCTCCGCCGTCGCTTTCTGTCACGCGCGTGGTGTTTATCATCGCGACCTTAAACCGGAGAATTTACTGCTCGATGAGAATGGGAATCTCAAGGTCTCCGATTTTGGTCTCAGCGCCGTCTCCGATCAAATTCGACAAGATGGGTTGTTTCATACTTTTTGTGGTACTCCGGCGTATGTGGCTCCGGAGGTTTTGGCTCGGAAAGGCTACGAGGCTGCGAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTTTAATGGCAGGTTATTTACCCTTCCACGACCAAAACATTATGGCAATGTATAAGAAGATTTACAAAGGGGAGTTCCGTTGTCCGAGATGGTTCTCGCCGGAGCTAATTCGACTCCTAACACGTCTTTTAGATACAAATCCCGAAACTCGTTTCACAATTCCTGAAATCATGGAGAATAGATGGTTCAAAAAGGGGTATAAGCATATCAAATTCTACATCGAAGATGATAAGGTATGCAGCGTTGAGGATGACAACGATGATGTTGATTCCTTGTCGGATCAGTCACAATCGGAATCGGATTCCGAAATAATTGAGACCAGACGAAAGGTTACCTCACTCCCAAGACCCGCGAGTTTGAATGCATTTGATATAATTTCGTTTTCACCCGGATTTGATCTTTCTGGATTGTTTGAAGATGGAGGGGAAGAGGCAAGATTTGTGTCAAGTGCTCCAGTGTCGAAGATTATATCAAAATTGGAGGAGATTGCAAAGTTGGTGAGTTTTGCTGTGAGGAAGAAGGATTGCAGGGTTAGTTTAGAGGGGTCACGGGAAGGAGTGAAAGGGCCATTGACAATCGCAGCCGAGGTATTCGAGTTAACGCCGAAATTGGTGATGGTAGAGGTGAAGAGGAAAGGGGGAGATAAAGAAGAGTATGAGCAGTTCTGTAACAATGAATTGAAGCCAGCATTGTTGAATCTGAAGGTGGAAGATTCTGGTGATCCTTCACATATACCATCAGATACTGAATGA 1404 46.3 MADRPDPDKKTETTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTNESVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELIRLLTRLLDTNPETRFTIPEIMENRWFKKGYKHIKFYIEDDKVCSVEDDNDDVDSLSDQSQSESDSEIIETRRKVTSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEEIAKLVSFAVRKKDCRVSLEGSREGVKGPLTIAAEVFELTPKLVMVEVKRKGGDKEEYEQFCNNELKPALLNLKVEDSGDPSHIPSDTE* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1500044 1501447 + Chy2G024910.1 Chy02g00224 219672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00224 467 CDD STKc_SnRK3 25 279 - -
Chy02g00224 467 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Chy02g00224 467 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy02g00224 467 SUPERFAMILY Protein kinase-like (PK-like) 22 323 IPR011009 -
Chy02g00224 467 MobiDBLite consensus disorder prediction 302 325 - -
Chy02g00224 467 PANTHER - 19 462 - -
Chy02g00224 467 Gene3D Kinase associated domain 1, KA1 335 452 - -
Chy02g00224 467 CDD CIPK_C 338 448 - -
Chy02g00224 467 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 19 462 - -
Chy02g00224 467 SMART serkin_6 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy02g00224 467 Gene3D Transferase(Phosphotransferase) domain 1 17 334 - -
Chy02g00224 467 Pfam NAF domain 334 390 IPR004041 GO:0007165
Chy02g00224 467 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy02g00224 467 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165
Chy02g00224 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00224 Chy-Chr2:1500044 Chy05g01236 Chy-Chr5:16762980 0 dispersed
Chy11g01779 Chy-Chr11:24148656 Chy02g00224 Chy-Chr2:1500044 4.09E-48 transposed
Chy04g02180 Chy-Chr4:26845684 Chy02g00224 Chy-Chr2:1500044 1.75E-47 transposed
Chy12g00083 Chy-Chr12:837203 Chy02g00224 Chy-Chr2:1500044 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71030 PF00069 Pkinase 4.60E-76 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00224 - - csv:101214053 889.026