Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00228 ATGGCTGAGGTTCATAGTAGCAACACCGATGGAATTAAACTTTTTGGCACTATGATTCATTTACAAACCCGAAAATTGAAGGAGGAACCGGAAAAAGGCGGAGCGGTCGCCGGCGGTGGTGAAGGTGATGAAACAGAGATGAAGAGGCCGGAAAAGATTATTCCATGTCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCAAGACATTTCTGCAAGGGTTGTCAAAGGTACTGGACGGCCGGTGGTGCGCTCCGTAACGTACCCATCGGAGCTGGTCGTCGGAGAGCCAAGCCGCCGCCTAATTGCCGGACGCTTTCCGGCGAGCTGTCTGAGGATTATGGGCAGTATTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTGGATGCGGTGGAGGGGTGGCATCTGACGGTGGCGGAACAGGATTTTACCAAAGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 522 48.85 MAEVHSSNTDGIKLFGTMIHLQTRKLKEEPEKGGAVAGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRTLSGELSEDYGQYYDAASGIIHQLELDAVEGWHLTVAEQDFTKVFPFKRRKIIGQHGQTS* 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1544177 1544698 + Chy2G024950.1 Chy02g00228 219676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00228 173 Pfam Dof domain, zinc finger 52 107 IPR003851 GO:0003677|GO:0006355
Chy02g00228 173 PANTHER CYCLIC DOF FACTOR 2 7 166 IPR045174 GO:0003700|GO:0006355
Chy02g00228 173 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Chy02g00228 173 MobiDBLite consensus disorder prediction 25 47 - -
Chy02g00228 173 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 7 166 - -
Chy02g00228 173 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00228 Chy12g00096 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00228 Chy-Chr2:1544177 Chy04g01628 Chy-Chr4:22727635 6.46E-37 dispersed
Chy12g00096 Chy-Chr12:1011289 Chy02g00228 Chy-Chr2:1544177 2.43E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17421 PF02701 zf-Dof 1.20E-31 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00228 - - csv:101215015 345.125