Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00253 ATGGGTTCTGGACGTTGGTTTAAGGCAGTAATTCGCTTAAAAAAAGTGAAAACCAGCAGTTCGAAACAAACTAAGGAGAAATTGGATGATTTTCAAAAAGATTCCCCAAGGTTTAAAAATGATGGTGCTAATGGAAACAGTAAGTCTCTTGCGATGCCGATTGAAGATGTAGCTGCAGTTCGGATTCAGACGGCATACCGAGCATATCGTGCCAGGAAAAATTTACGTCTCTTGAAAGGGGCCTTTAGACTGCAGAATTTGACTCAAGGTCATTCCGTTAGAAAGCATGCTACATCTACATTAGCTTATCTTCATTCATGGAGCCAAATACAGGCTCAAATTAGGGCTCGTCGACTTTGTATGGTGACAGAAGGACGACAGAGACAAAAAAGATTAGAAAATCAACGAAAACTTGAAGCTAAGCTTCATGATATAGAGGTGGAGTGGTGTGGGGGTGCAGACTCCATGGACGGGATTCTTTCAAGGATACATGATAGAGAAGAAGCAGCTGTTAAGCGCGAGCGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCTAATGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAGGAACGATGGATAGCTGCTCGTCCATGGGAAAGCCGTGTACCATCTCAGTTTGTTAGTCCAAAGAAATCTACAATCAGACAATCAAGCAAAGTCAGTAAGAGAAACTCACCATCCCCTAAAGCACGAGGTCCACTGAAACCTCCTTCCCCGAATGGGAAATCATCTGCAAAGGCTCGGAGGTTGTCTTATCCAGCAACAGAGAAAACCGAGAAACTGGCTGCACAAGAAAAAGGCGTCAAAGAAAGCGTTAAAAATGACGAAGGGAACACCAAGAAAGAAGAAACAACACCCTAA 924 43.51 MGSGRWFKAVIRLKKVKTSSSKQTKEKLDDFQKDSPRFKNDGANGNSKSLAMPIEDVAAVRIQTAYRAYRARKNLRLLKGAFRLQNLTQGHSVRKHATSTLAYLHSWSQIQAQIRARRLCMVTEGRQRQKRLENQRKLEAKLHDIEVEWCGGADSMDGILSRIHDREEAAVKRERAMAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFVSPKKSTIRQSSKVSKRNSPSPKARGPLKPPSPNGKSSAKARRLSYPATEKTEKLAAQEKGVKESVKNDEGNTKKEETTP* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1645222 1648413 - Chy2G025200.1 Chy02g00253 219701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00253 307 MobiDBLite consensus disorder prediction 18 49 - -
Chy02g00253 307 MobiDBLite consensus disorder prediction 19 37 - -
Chy02g00253 307 ProSiteProfiles IQ motif profile. 55 83 IPR000048 GO:0005515
Chy02g00253 307 MobiDBLite consensus disorder prediction 224 307 - -
Chy02g00253 307 Pfam IQ calmodulin-binding motif 58 76 IPR000048 GO:0005515
Chy02g00253 307 MobiDBLite consensus disorder prediction 226 246 - -
Chy02g00253 307 Gene3D - 55 103 - -
Chy02g00253 307 PANTHER IQ-DOMAIN 9 1 280 - -
Chy02g00253 307 MobiDBLite consensus disorder prediction 273 307 - -
Chy02g00253 307 ProSiteProfiles IQ motif profile. 77 106 IPR000048 GO:0005515
Chy02g00253 307 PANTHER IQ-DOMAIN 5-RELATED 1 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00253 - - - csv:101220729 595.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00253 Chy-Chr2:1645222 Chy07g00958 Chy-Chr7:14202843 3.60E-70 dispersed
Chy11g01898 Chy-Chr11:25165149 Chy02g00253 Chy-Chr2:1645222 9.17E-19 dispersed
Chy02g00253 Chy-Chr2:1645222 Chy10g01339 Chy-Chr10:17688916 2.36E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g183 . . Bda02g00019 . . Bpe01g00879 . . . . . Cma07g00203 . Car07g00168 . . . Bhi03g00330 . . . . . . Cla01g02298 Cam01g2409 Cec04g2056 . Clacu01g2430 Cmu01g2294 Cre04g1962 Cone1ag0191 Cone5ag1677 . . Lsi01g00265 Csa06g03677 . Cme08g00247 . . . . . . . Bma11g01010 . . Cmo07g00202 . . . . Cpe19g01052 . . . . . . . . . . . . . . . . . Chy02g00253 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g00721 . 1 499 IQD Protein Family AT3G52290 51.7 2.2e-98 356.3
Chy02g01601 . 1 295 IQD Protein Family AT3G22190 62.5 6.6e-76 281.6
Chy07g00252 . 1 466 IQD Protein Family AT2G26180 56.8 1.5e-112 403.3
Chy02g00253 . 1 274 IQD Protein Family AT2G33990 52.9 4.0e-63 238.4
Chy07g00958 . 65 240 IQD Protein Family AT2G33990 54.7 1.3e-48 190.3
Chy02g00253 . 1 232 IQD Protein Family AT3G15050 50.9 4.7e-56 214.9
Chy07g00958 . 68 241 IQD Protein Family AT3G15050 61.6 9.8e-54 207.2
Chy11g01727 . 1 513 IQD Protein Family AT4G00820 50.4 6.4e-108 388.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00253 Chy_Chr02 FPKM 19.511456 22.779385 10.259458 10.840738 14.932927 13.079422 15.970043 10.496011 10.654536 11.016088