Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00253 ATGGGTTCTGGACGTTGGTTTAAGGCAGTAATTCGCTTAAAAAAAGTGAAAACCAGCAGTTCGAAACAAACTAAGGAGAAATTGGATGATTTTCAAAAAGATTCCCCAAGGTTTAAAAATGATGGTGCTAATGGAAACAGTAAGTCTCTTGCGATGCCGATTGAAGATGTAGCTGCAGTTCGGATTCAGACGGCATACCGAGCATATCGTGCCAGGAAAAATTTACGTCTCTTGAAAGGGGCCTTTAGACTGCAGAATTTGACTCAAGGTCATTCCGTTAGAAAGCATGCTACATCTACATTAGCTTATCTTCATTCATGGAGCCAAATACAGGCTCAAATTAGGGCTCGTCGACTTTGTATGGTGACAGAAGGACGACAGAGACAAAAAAGATTAGAAAATCAACGAAAACTTGAAGCTAAGCTTCATGATATAGAGGTGGAGTGGTGTGGGGGTGCAGACTCCATGGACGGGATTCTTTCAAGGATACATGATAGAGAAGAAGCAGCTGTTAAGCGCGAGCGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCTAATGAGATGTATGGGTTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAGGAACGATGGATAGCTGCTCGTCCATGGGAAAGCCGTGTACCATCTCAGTTTGTTAGTCCAAAGAAATCTACAATCAGACAATCAAGCAAAGTCAGTAAGAGAAACTCACCATCCCCTAAAGCACGAGGTCCACTGAAACCTCCTTCCCCGAATGGGAAATCATCTGCAAAGGCTCGGAGGTTGTCTTATCCAGCAACAGAGAAAACCGAGAAACTGGCTGCACAAGAAAAAGGCGTCAAAGAAAGCGTTAAAAATGACGAAGGGAACACCAAGAAAGAAGAAACAACACCCTAA 924 43.51 MGSGRWFKAVIRLKKVKTSSSKQTKEKLDDFQKDSPRFKNDGANGNSKSLAMPIEDVAAVRIQTAYRAYRARKNLRLLKGAFRLQNLTQGHSVRKHATSTLAYLHSWSQIQAQIRARRLCMVTEGRQRQKRLENQRKLEAKLHDIEVEWCGGADSMDGILSRIHDREEAAVKRERAMAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFVSPKKSTIRQSSKVSKRNSPSPKARGPLKPPSPNGKSSAKARRLSYPATEKTEKLAAQEKGVKESVKNDEGNTKKEETTP* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1645222 1648413 - Chy2G025200.1 Chy02g00253 219701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00253 307 MobiDBLite consensus disorder prediction 18 49 - -
Chy02g00253 307 MobiDBLite consensus disorder prediction 19 37 - -
Chy02g00253 307 ProSiteProfiles IQ motif profile. 55 83 IPR000048 GO:0005515
Chy02g00253 307 MobiDBLite consensus disorder prediction 224 307 - -
Chy02g00253 307 Pfam IQ calmodulin-binding motif 58 76 IPR000048 GO:0005515
Chy02g00253 307 MobiDBLite consensus disorder prediction 226 246 - -
Chy02g00253 307 Gene3D - 55 103 - -
Chy02g00253 307 PANTHER IQ-DOMAIN 9 1 280 - -
Chy02g00253 307 MobiDBLite consensus disorder prediction 273 307 - -
Chy02g00253 307 ProSiteProfiles IQ motif profile. 77 106 IPR000048 GO:0005515
Chy02g00253 307 PANTHER IQ-DOMAIN 5-RELATED 1 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00253 Chy-Chr2:1645222 Chy07g00958 Chy-Chr7:14202843 3.60E-70 dispersed
Chy11g01898 Chy-Chr11:25165149 Chy02g00253 Chy-Chr2:1645222 9.17E-19 dispersed
Chy02g00253 Chy-Chr2:1645222 Chy10g01339 Chy-Chr10:17688916 2.36E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00253 - - csv:101220729 595.119