Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00274 ATGGAGTCCCACTTTCTCTCACGCGCCACCTCCTTCGCCGGCGCCATTCCCTCCCTCCGCAAGTTGCACAGAGATGCCACCTCTAACAGCAACCATGTCGCCTTTGTCCACACTAGGCCTATCGCCGAGGGAGCCAACTTGATCTGGGGAAGACAACTCCGCCCCTCTTTGCTTCTCGATACGCAGCATCTTGTGGCGGGTAAACGTGACACTATTCGCCCTACCTTTGCGGCGGCCTCCTCTTCTCCAGCCGGAGGTAGCGATTCCGCCGGAGAGGCGAAGGTTGCTCCGGTTGGTTTCTTGGAGAAGTACCCGGCGTTGGTCACCGGATTTTTCTTCTTCATGTGGTACTTTTTGAACGTGATTTTCAATATCCTCAATAAGAAGATATATAATTACTTCCCCTATCCATATTTTGTGTCGGTGATCCATTTGGTTGTTGGGGTTGTGTACTGCTTGATAAGCTGGGCAGTGGGTCTTCCTAAGCGAGCACCTATTGATTCAACCCTCCTGAAGTTGCTGATCCCTGTAGCTTTCTGTCATGCACTTGGCCACGTCACTAGCAATGTCTCATTCGCAGCTGTTGCTGTCTCATTCACTCACACAATCAAAGCTCTGGAACCATTCTTTAACGCTGCCGCTTCTCAATTCATTTTGGGGCAATCCATTCCCATTACCTTGTGGCTTTCATTGGCTCCTGTTGTCATTGGTGTGTCAATGGCATCCTTGACTGAGCTTTCATTTAACTGGACTGGTTTCATTAGTGCTATGATTTCCAATATTTCCTTTACCTACAGAAGTATTTATTCAAAGAAAGCCATGACTGACATGGACAGCACCAACGTCTATGCTTATATTTCCATTATTGCTCTCCTTTTCTGCATTCCACCTGCTGTGATCGTGGAAGGACCTCAACTGCTTAAATTTGGTTTCAATGATGCCATAGCCAAAGTTGGTCTAACCAAATTCGTCTCAGATCTCTTCTGGGTAGGAATGTTTTATCACCTTTACAATCAGTTAGCAACCAACACCTTGGAGAGGGTAGCACCACTTACTCATGCAGTTGGAAATGTTCTGAAACGTGTATTTGTGATTGGATTCTCCATCATTGTCTTTGTGGAGACTTACCCATCGGAGTCCACAAGGGCTGAACTTTCGGAGAAATTGGGCCTCACCGATCGGCAATTGCAGATGTGGTTTTGTCACAGGAGGTTGAAGGACAAGAAGGAACCGGTGAAGAAACCCAGAAAGGTGGTACCTGCTCCTCCCTCGGCGTTGCCTGATTCTCCCATTGACGAATTGAGAGTAGTGGCTGAGCCGGGTAGTGATTATGCTTCAGGGTCGGGATCGGGTTCGAGTCCATTTGGTGATGTTGGGTTGCGTAATGCGGCACCTAGAAGTGTTGGAGATGATATGCCAATGATGAGAAGGTATTATGAAACTTCACGGTCTGTTATGGAACTTAGAGCTATTGCCTGTGTGGAGTCGCAGTTAGGTGAGCCATTGAGGGAGGACGGACCTATTCTTGGGATTGAATTTGATCCACTACCACCTGATGCTTTCGGAGCACCTATAGTAGCAGAACAGCAGAAGCGATCTGGACATTATGAACAACGGGATGCAAAATCAAATAAAGTGTCTGCAAGAGGATTCCCTGAATATCCCTTTATGCCAGACCAGGCTAATATTAGAGCTGATGCCTATGGTCCAGTTTCCCAATTACATTATCAAGATTCTTTAGGCGAGGTTTCAGCATCCAGGACACCATCATTTTTGCATGGTCATGAACAGTTGAACAGGAGCCATAATTACCACAGTCAGGTCTCAAGAGTTCGTCACATGTCCCAACAGGAGAAGCAGGGAGTTACAATTTCATCTCCTGCTGAAGACAATGCATTTTCCCTTCCAAGGGATTCTTATCCAAATATCAGAATGAATTCGCAGTTCACTGAACACCCAATCGTTGGACAAGAAAATTCTTATGTGTTGCCTGATGGGCATGCTTTTCCAAACGATGCCATGATTAGGATGGAAAGGAAACGCAAGAGTGAAGAAGCTCGTTTGAGCAAAGAAGCTGAAGCCCACGAAATAAGAATGCGGAAAGAGCTTGAGAAACAAGATATTTTGAGGAAAAAGAATGAAGAACGAATGAGGAAAGAAATGGAAAAGCAAGATCGCGAAAGAAGAAGAGAAGAGGAGAGGTTACTGCGAGAAAAGCAGCGTGAAGCTGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGAAGGGAAAAGTTTCTGCAGAGGGAGTATTTGAGGGCTGAGAAGAGGAAACAAAAAGAAGCTATTCGCAAAGAGAAGGAAGCTGTGAGGCGCAAAGCTGCTATTGAGAAGGCTACTGCTCGTAGAATTGCCCGTGAGTCTATGGAGCTAATTGAGGACGAACAGCTTGAACTGATGGAACTGGCTGCCGCGAACAAAGGATTATCTTCCATATTAAGTCTTGATCACGACACTTTGCAGAACCTTGAATCTTTCCGAGATTATCTTGGTGCATTTCCACCCAAGTCTGTGCAATTGAAGAAACCTTTCGGCATTCAGCCTTGGGTCAATTCAGAGGAGAACATTGGTAACCTTCTCATGGTCTGGAGATTTTTTATTACATTTTCTGATGTTCTAGAGCTGTGGCCCTTTACTCTTGATGAGTTTGTTCAAGCTCTTCATGACTATGATTCGAGATTGCTGGCTGAGATTCACATTTGCCTTCTGAGACTGATTGTAAAAGATATTGAAGATGTTGCAAGAACACCTTCTACTGGAATGGGAATGAACCAGAATGGTGTTGCCAACTCTGGAGGTGGACATCCGCAAATTGTTGAAGGGGCATATGCGTGGGGGTTTGACATTTGCAATTGGCAGAAGCATTTAAACCCATTAACATGGCCAGAAATATTTCGACAATTAGCACTATCAGCTGGACATGGACCTCAGTTGAAAAAGAGGAGTTTGGCAATGTCTGAAATGCGTAGCAAAGATGAGGCTAAATGCGGTGAGGACGTAGTTTCTACTTTACGCAATGGTTCAGCAGCTGAAAATGCATTTGCTATCATGCAAGAAAAAGGTTTGTTAGCTCCTCGGAGATCTAGGCATCGGCTAACTCCTGGAACTGTCAAATTTGCTGCTTTTCATGTTCTTTCTCTAGAAGGCAGCGAGGGGCTAACAGTACTAGAACTTGCAGAGAAGATACAGAGATCAGGACTTAGAGATCTGTCTACAAGCAAAACACCGGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACGAAGCTTTTTGAAAGAATAGCTCCTTCCACATATCGCGTACGAGCTCCCTATAGGAAGGATCCAGATGATGCCGATGAGATACTTTCTGTAGCCAGAAAGAAAATTCAGGTATTCCAGAATGGGTTCTTGGCTGGAGAAGATGCTGATGATGTTGAAAGAGATGAAGAATCTGAATGTGATGATGTTGACGAAGATCCTGAAGTTGATGATATAGCGTCGACTTCCTTGGTGAATGAAGATGTTAGCAAAGGAGATGTGAACTTGGGAGTTGAGAATGAGAACTTATGTCATGATATTGCTGGAAATCTACAAAATGATATTGCCAAAGATGTATTGCCATTCCCTATAAGTGGCTCTAAGGACGCAAAATATTTAAGCATGCCTACAGAGCAGTATGCTGCTGCTGATGAGACTACTATCAGTGACCTTGATCAAGAAAATATGGAGATCGATGAAAGCAAGGAAGGTGAATCATGGATCCAGGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGCTTGAATGCCCTTGTTGTCTTGACCAGTATTGCAAATGAAGGAAACTCTATTCGCCTTGTCCTTGAGGATCGCTTGGAAGCTGCAAATGCTGTTAAGAAGCAAATGTTGACAGAGGCTCAGATTGATAAATCTCGCCTAAAAGAAGAGATCATTACTAAATCTGATTTTCCAATTCATATAGTAAGCAAGGTGGAAATTGAACTCAACGGTTCCACTATGGATGGCGGGCAAAGCCCTTTTCCTGTTGCCGACAATAAGAACAATGAAACAACCCCAAGCACTGCAGAAAACCACAGTAGTGTGCCTAATGAGAGGGGTACTTTAGTGCCAGATCTTTTCCCAGGTCCAGATAACTTCTTGGCTCAGCAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCATAGAGCTGAAGAAATGTACACATACAGATCTTTGCCTCTTGGTCGAGATCGTAGGCGTAATCGGTATTGGCAATTTGTTGCATCTTCTTCAAGCAATGATCCTGGTTCTGGGAGAATCTTTGTTGAAATGTACGATGGAAAGTGGAGGCTTATTGATTCTGAAGAGGGTTTTGATGCTCTTTCATTGGCTTTGGACATACGTGGGACTAGAGAATCACACTTGCGCATAATGTTGCAAATGATAGAGACATCATTTAAGGAAAATGTTCGGAGGAATCTGCAGTGTGCCAATGAGATGGTTCAAAGTGGAATTACTCCTAAAACTGAAAATGATTATTCAAGCTCTAGTCCTGATTGCACTGCTGGTCTTAACAGTCCTAGTAGTACTGTTTGCGGATTAAATTTGGAGACAATGGTAACATCATCTTCATTCAGAATTGAGCTTGGGAGAAATGAAAACGAAAAGAAGAATGCATTTAGACGGTATCAAGACTTGCAGAGGTGGATGTTAAGAGAGTGCTTTAGCACATCTACTCTATGTGCCATGAAATTTGGAGAAAAAAGATGCAATTCACTGTTTGACATTTGTGATTCTTGTCTGTGCTTGTTTGATTCTCAACATTCTCACTGTCCTTCGTGCCATCAAACTTTTGGCGTTGGTGGGAATGATATTAATTTTCTAGAACACAAACGTCACTGTGAGAGGGAAAGGAAGTATAGCCCTTTGGATACACACTTTTTAGATGCATCTCTTCCCCTCAAAAGTAGGTTGCTCAAGGCTTTCCTAGCTTTCATTGAGGTACATGTTCCGTCAGAAGCTTTTCAATTATTTTGGACAGAACATAGGCAAGAGTGGGGTGTCAGGATGAAACTATCATCTTCTATTGAGGAGCTTCTACAGTTATTGACCATGTTTGAAAATGTAATTAAGCGAGACTTTCTAAAATCAGACTTCACTACAACTGACGAGCACCTAAGTTCATGTTCTATCTCTGGGAATGTTATACATGATCCTGCAGATATTGGATCGGTACTTACATTACCATGGATTCCACGGACTAGTGCAGCTGTTGGTTTAAGGCTTTGTGAGGTAGATGCATCAATTTATTATATTGGATGCGAGAAACCAGAGCCTGACCAGGACAAGGAACTCGGAGAACATATAAACTTTTCCAGTAGATATGTCCAGGTTAAGAATGATGAACGGACTAAACTAAATGGCTTGGATTATGATGATCTGATGAAGAACGAAAACTCAGCCGATCCAAAAAGTTTAAGGAACAGCTATAAACGCGGTCGAGGAAGTAGAGATTTTGGACGTCGTAGGAAGTGGCAGAAAAAAGTTAATGGATCCAGATCTGGCCGGGTCCGGCAAAATGTCAAGAGTAACGAGAAGATGAATCAAGGACAGGGAGAGCTGGGACAAGGAACTCAGCTTATGGGCATACGCGGCCGCCGTACAGTAAGGAAAAGGAGGGCTGAGAAGAGCATTCCCGATGAAGGATTGTCAGGGCTAGTGCCTAGTAGCAGTACTCAGAACATAGATGAATCCCCAAAAGATTATCTTGGGGAATGGGAGGATGAAAAAATTGATAGATTTGTCGATATGGAAGATGAAGAGAATGTGATGGAAGATGAAGAGAATATGATGGAAGATGAGGAGAATGAGGATAATGAAGAGAATGTAAACAACGTAGAACAGATGGACTCCGACGATGGCCAGGAAGTTGGATATGGGCAAGGGGGCTGGGAGTTTGGGTTTGAAGGTACTTCCAACAGATGGAACGGTGATTTAGGAATAGGTAGTGACGAGGATGTGGATTTATCTGACTACAATGGCACCGAAGAGGGAGGAAATGATGATATAGAGGAAGTAGATGTTGATAGCAGCGAGGAGTCGGATTGTTCACCAAATAGGATAGGCAACAATGGAGGAGAATCCGCTGTTTCAGACGACTATAGTGATTAA 6225 43.68 MESHFLSRATSFAGAIPSLRKLHRDATSNSNHVAFVHTRPIAEGANLIWGRQLRPSLLLDTQHLVAGKRDTIRPTFAAASSSPAGGSDSAGEAKVAPVGFLEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLVVGVVYCLISWAVGLPKRAPIDSTLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALLFCIPPAVIVEGPQLLKFGFNDAIAKVGLTKFVSDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFVETYPSESTRAELSEKLGLTDRQLQMWFCHRRLKDKKEPVKKPRKVVPAPPSALPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNAAPRSVGDDMPMMRRYYETSRSVMELRAIACVESQLGEPLREDGPILGIEFDPLPPDAFGAPIVAEQQKRSGHYEQRDAKSNKVSARGFPEYPFMPDQANIRADAYGPVSQLHYQDSLGEVSASRTPSFLHGHEQLNRSHNYHSQVSRVRHMSQQEKQGVTISSPAEDNAFSLPRDSYPNIRMNSQFTEHPIVGQENSYVLPDGHAFPNDAMIRMERKRKSEEARLSKEAEAHEIRMRKELEKQDILRKKNEERMRKEMEKQDRERRREEERLLREKQREAERLKREERREHERREKFLQREYLRAEKRKQKEAIRKEKEAVRRKAAIEKATARRIARESMELIEDEQLELMELAAANKGLSSILSLDHDTLQNLESFRDYLGAFPPKSVQLKKPFGIQPWVNSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLAEIHICLLRLIVKDIEDVARTPSTGMGMNQNGVANSGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGHGPQLKKRSLAMSEMRSKDEAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDADEILSVARKKIQVFQNGFLAGEDADDVERDEESECDDVDEDPEVDDIASTSLVNEDVSKGDVNLGVENENLCHDIAGNLQNDIAKDVLPFPISGSKDAKYLSMPTEQYAAADETTISDLDQENMEIDESKEGESWIQGLTEGEYHDLSVEERLNALVVLTSIANEGNSIRLVLEDRLEAANAVKKQMLTEAQIDKSRLKEEIITKSDFPIHIVSKVEIELNGSTMDGGQSPFPVADNKNNETTPSTAENHSSVPNERGTLVPDLFPGPDNFLAQQCGHASKRSRSQLKSYIAHRAEEMYTYRSLPLGRDRRRNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEEGFDALSLALDIRGTRESHLRIMLQMIETSFKENVRRNLQCANEMVQSGITPKTENDYSSSSPDCTAGLNSPSSTVCGLNLETMVTSSSFRIELGRNENEKKNAFRRYQDLQRWMLRECFSTSTLCAMKFGEKRCNSLFDICDSCLCLFDSQHSHCPSCHQTFGVGGNDINFLEHKRHCERERKYSPLDTHFLDASLPLKSRLLKAFLAFIEVHVPSEAFQLFWTEHRQEWGVRMKLSSSIEELLQLLTMFENVIKRDFLKSDFTTTDEHLSSCSISGNVIHDPADIGSVLTLPWIPRTSAAVGLRLCEVDASIYYIGCEKPEPDQDKELGEHINFSSRYVQVKNDERTKLNGLDYDDLMKNENSADPKSLRNSYKRGRGSRDFGRRRKWQKKVNGSRSGRVRQNVKSNEKMNQGQGELGQGTQLMGIRGRRTVRKRRAEKSIPDEGLSGLVPSSSTQNIDESPKDYLGEWEDEKIDRFVDMEDEENVMEDEENMMEDEENEDNEENVNNVEQMDSDDGQEVGYGQGGWEFGFEGTSNRWNGDLGIGSDEDVDLSDYNGTEEGGNDDIEEVDVDSSEESDCSPNRIGNNGGESAVSDDYSD* 2075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1782765 1799150 + Chy2G025410.1 Chy02g00274 219722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00274 2074 Pfam HB1, ASXL, restriction endonuclease HTH domain 1049 1117 IPR007759 GO:0006355
Chy02g00274 2074 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1257 1297 IPR028942 -
Chy02g00274 2074 Coils Coil 1955 1982 - -
Chy02g00274 2074 Pfam Triose-phosphate Transporter family 108 374 IPR004853 -
Chy02g00274 2074 MobiDBLite consensus disorder prediction 440 467 - -
Chy02g00274 2074 SUPERFAMILY Homeodomain-like 373 421 IPR009057 -
Chy02g00274 2074 MobiDBLite consensus disorder prediction 1922 1936 - -
Chy02g00274 2074 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1428 1498 IPR028941 -
Chy02g00274 2074 MobiDBLite consensus disorder prediction 2053 2074 - -
Chy02g00274 2074 Pfam Homeodomain 374 409 IPR001356 GO:0003677
Chy02g00274 2074 MobiDBLite consensus disorder prediction 710 734 - -
Chy02g00274 2074 MobiDBLite consensus disorder prediction 1349 1382 - -
Chy02g00274 2074 SMART HOX_1 343 414 IPR001356 GO:0003677
Chy02g00274 2074 Coils Coil 709 787 - -
Chy02g00274 2074 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 107 372 IPR004696 GO:0016021|GO:0022857|GO:0055085
Chy02g00274 2074 CDD homeodomain 376 410 IPR001356 GO:0003677
Chy02g00274 2074 MobiDBLite consensus disorder prediction 1831 1853 - -
Chy02g00274 2074 MobiDBLite consensus disorder prediction 531 550 - -
Chy02g00274 2074 MobiDBLite consensus disorder prediction 1988 2074 - -
Chy02g00274 2074 MobiDBLite consensus disorder prediction 1906 1937 - -
Chy02g00274 2074 ProSiteProfiles 'Homeobox' domain profile. 359 410 IPR001356 GO:0003677
Chy02g00274 2074 MobiDBLite consensus disorder prediction 2027 2050 - -
Chy02g00274 2074 Gene3D - 370 408 - -
Chy02g00274 2074 ProSiteProfiles DDT domain profile. 867 926 IPR018501 -
Chy02g00274 2074 MobiDBLite consensus disorder prediction 1870 1894 - -
Chy02g00274 2074 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 373 2074 - -
Chy02g00274 2074 MobiDBLite consensus disorder prediction 1854 1869 - -
Chy02g00274 2074 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 373 2074 IPR044977 GO:0006357
Chy02g00274 2074 SMART testlast3 867 926 IPR018501 -
Chy02g00274 2074 MobiDBLite consensus disorder prediction 1831 1894 - -
Chy02g00274 2074 MobiDBLite consensus disorder prediction 532 546 - -
Chy02g00274 2074 Pfam DDT domain 868 923 IPR018501 -
Chy02g00274 2074 SUPERFAMILY Multidrug resistance efflux transporter EmrE 151 244 - -
Chy02g00274 2074 ProSiteProfiles HARE-type HTH domain profile. 1049 1118 IPR007759 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01104 Chy-Chr1:12510426 Chy02g00274 Chy-Chr2:1782765 2.92E-66 dispersed
Chy01g01183 Chy-Chr1:13835967 Chy02g00274 Chy-Chr2:1782765 7.03E-23 dispersed
Chy02g00274 Chy-Chr2:1782765 Chy06g01802 Chy-Chr6:21686807 6.42E-66 dispersed
Chy05g00161 Chy-Chr5:1258670 Chy02g00274 Chy-Chr2:1782765 9.09E-07 dispersed
Chy11g00014 Chy-Chr11:198746 Chy02g00274 Chy-Chr2:1782765 1.09E-06 dispersed
Chy02g00274 Chy-Chr2:1782765 Chy10g01056 Chy-Chr10:15739628 3.79E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17428 PF03151 TPT 7.30E-99 CL0184 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00274 - - csv:101220962 3075.8