Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00324 ATGGGTTGTGCTAATTGGAATTTGCTCATGAAGATCCTAATTGGGCTGCTCTTGGTTTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTTCGGGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCTAGGGGTTGAATGTGTATTCTCAAATATAACATCTTTACAACTCAGTGGATTGAATTTAGGAGGAGAGCTAGGCACTAGCTTGGACCAATTCGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCCACACTGCCCCCTACACTGAGAAGTCTTTCTTTATCAGCCAATCAATTCACTGGAAGCATCCCCCCTGCACTGGCCTCGCTAGCACAACTAATGGACCTGTCACTAAATAACAACCTTCTTACCGGGGCAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACATGTCAAGCAACAACTTGAGTGGTCAGCTGCCTCCTTCGGTGGCTGATTTGTTATCCCTTACTACATTGCACTTGCAGAACAATCAACTTTCTGGGTTGCTTGACCCTCTACAGGAACTTCCGTTGTCAGACTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCAAAATTTCAGAAAAGATGGGAACCCTTTCAATACTACGATTATTCCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACCACCAACTAGACAAGCAGGTGGAGGCCAGCCATTGTGGCCTGGGACTCCTGAATCATCAGATGGAGCAAGGAGCTTTTTCTCTGTTAAGCGAATCATTTGGATTGTTATTATTGGGACAGTAATATTAGTAGCATTAGGATTCTGTCTTCTTGTGTCAATATGCTTGAAAAGAAGCAAGCGTCGAAAAGACAACAAGATTGTTCGTGACAACACTGATATGGCTTCTAAATATAAGCCTAAACCCATGAAGCCCTCGGTTGAAGGTGTAGACATGGAGAAAGCTCCAAAGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAACAATGGATTTTACAACCCCAAGGCTACATGATAAACAGGACACAAATGGGAAAAGAAAAGATGTCTCTAATACAAGTTTCCGACGAGACTATACAGAGAGTTCAAGCATAAGCATGGATGACTTCCCTCCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATGGCGGCTGAAATGCCCAGTAAAGTACCTAGAAAACTGAAAACAAGTTCTCTAAAAGTTTTCACAATCGCATCACTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAGAGGCATGCTTGGTAGTGTCTATAGTGCTGAACTGCCAAGTGGAAGGCTTCTGGCTGTTAAGAAACTGGATGGATCCTCTTCAACTCATTGGAAAGATGATGATTTTCACAACCTGGTGTCTATTATATGTCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGTGCTGAGCATGGACAATATCTACTCATTTACGAGTACTGCGAAAATGGCACGCTCTATGATGCACTCCATGTAGACAAGGAGATGCATCAAAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGCGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTATCATGCACCAAAATTTCAAGTCTGCTAACATTCTCTTGGACAATGAGCTAAAATCACGAGTCTCTGACTCTGGCTTAGTTCGGCTGCTGCCTTCGGCTACTCAGTCATCTGCACGATCTCTCCCAGCTCAGGGTTATAGTGCTCCTGAATTTGAGCTAGGAACTTACACTTACCAAAGTGATCTTTATAGCTTCGGAGTCGTAATGCTAGAGCTTTTGACTGGTCGAAAGTCTTGCGATCGATCACTGCCTCGAGGAGAACAGTTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGATATCGATGCATTATCACGAATGGTCGATCCATCACTTAATGGCATGTATCCTGCTAAATCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGCATAATGAGAGAGCCCGAATTTCGGCCCCCGATTTCCGAAATTGTACAGGAACTCTTACAAATGCTGTAG 2259 43.91 MGCANWNLLMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWLGVECVFSNITSLQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPPTLRSLSLSANQFTGSIPPALASLAQLMDLSLNNNLLTGAIPDVFQLLNGLNNLDMSSNNLSGQLPPSVADLLSLTTLHLQNNQLSGLLDPLQELPLSDLNIENNLFSGPIPAKLLGIQNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTVGPPTRQAGGGQPLWPGTPESSDGARSFFSVKRIIWIVIIGTVILVALGFCLLVSICLKRSKRRKDNKIVRDNTDMASKYKPKPMKPSVEGVDMEKAPKETTLKPLDRDRMKDRTMDFTTPRLHDKQDTNGKRKDVSNTSFRRDYTESSSISMDDFPPPPPPPPFPLLSTQEIAKPMAAEMPSKVPRKLKTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYSAELPSGRLLAVKKLDGSSSTHWKDDDFHNLVSIICQIRHDNIVELVGYCAEHGQYLLIYEYCENGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPIMHQNFKSANILLDNELKSRVSDSGLVRLLPSATQSSARSLPAQGYSAPEFELGTYTYQSDLYSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPAKSLSRFADIISSCIMREPEFRPPISEIVQELLQML* 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2101640 2105713 + Chy2G025910.1 Chy02g00324 219772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00324 752 ProSiteProfiles Leucine-rich repeat profile. 191 213 IPR001611 GO:0005515
Chy02g00324 752 PANTHER LEUCINE RICH REPEAT KINASE 2 8 752 - -
Chy02g00324 752 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Chy02g00324 752 MobiDBLite consensus disorder prediction 353 408 - -
Chy02g00324 752 Gene3D Transferase(Phosphotransferase) domain 1 554 752 - -
Chy02g00324 752 SUPERFAMILY Protein kinase-like (PK-like) 453 748 IPR011009 -
Chy02g00324 752 ProSiteProfiles Protein kinase domain profile. 476 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy02g00324 752 MobiDBLite consensus disorder prediction 421 436 - -
Chy02g00324 752 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 3-LIKE ISOFORM X1 8 752 - -
Chy02g00324 752 SUPERFAMILY L domain-like 35 237 - -
Chy02g00324 752 Gene3D Phosphorylase Kinase; domain 1 438 553 - -
Chy02g00324 752 MobiDBLite consensus disorder prediction 336 436 - -
Chy02g00324 752 Gene3D Ribonuclease Inhibitor 39 256 IPR032675 -
Chy02g00324 752 Pfam Protein tyrosine and serine/threonine kinase 480 748 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00324 - - - csv:101209168 1409.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00324 Chy-Chr2:2101640 Chy12g00528 Chy-Chr12:7317261 9.15E-180 dispersed
Chy01g00369 Chy-Chr1:2634308 Chy02g00324 Chy-Chr2:2101640 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy12g00528 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.3e-84 311.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy04g00715 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 8.0e-215 743.8
Chy01g02121 . 8 714 Strubbelig Receptor Gene Family AT1G53730 60.1 3.3e-184 642.1
Chy12g00528 . 5 689 Strubbelig Receptor Gene Family AT1G53730 51.6 1.4e-158 557.0
Chy03g00317 . 15 682 Strubbelig Receptor Gene Family AT1G53730 51.8 1.2e-157 553.9
Chy04g00715 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 7.2e-189 657.5
Chy01g02121 . 6 704 Strubbelig Receptor Gene Family AT3G14350 55.1 4.9e-169 591.7
Chy12g00528 . 138 712 Strubbelig Receptor Gene Family AT4G22130 60.3 1.1e-179 626.7
Chy04g00715 . 398 726 Strubbelig Receptor Gene Family AT4G22130 63.4 5.3e-121 431.8
Chy01g02121 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.2 5.1e-116 415.2
Chy01g00369 . 456 780 Strubbelig Receptor Gene Family AT4G22130 57.7 4.3e-107 385.6
Chy03g00317 . 386 696 Strubbelig Receptor Gene Family AT4G22130 56.9 2.2e-98 356.7
Chy02g00324 . 464 752 Strubbelig Receptor Gene Family AT4G22130 60.1 2.8e-98 356.3
Chy04g01764 . 393 715 Strubbelig Receptor Gene Family AT4G22130 50.5 2.9e-87 319.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71033 PF07714 PK_Tyr_Ser-Thr 1.40E-38 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00324 Chy_Chr02 FPKM 0.404896 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0