Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00356 ATGGCGGCTCCATATCCTGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCCTCAATCCAACGCTGGCTCGACGCTGGTCACCGGACTTGCCCTATCACCCAATTGCCCCTTCCTCAAAACCCTTCTCTAATACCTAACCATGCCCTTCGTAGCTTAATTTCAAATTTCAACCCTGTTTCCCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCCCTTGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTTTCAAAGCGCGATTCCGCTGTGCGTCGAAGATTGACCGAGTCAGGTGCCGTTTCGGCCGTTCTTAAATGCGTTGGTTCTGACGATCCCAGTCTCCAAGAGAAAGCTCTCTCCCTCTTGCTTAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGTCTCACCGTCGCCGCTCTTCAAGCTAGGTCCGCCGATTGCAGAGCCGTAGCGGCCACGATGCTGACGAGCTTAGCGGTTGTGGAGGTAAACAAAGCTACAATTGGGGCATATCCCTATGCAGTTCGTTCTCTGGTTTATCTCTTACGGAGCGGCAACAACAGAGAGCAGAAAGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGGAACCGTTTGCGGGTTGTGGAATGTGGGGCTGTTCCCATTTTGCTTAAACTCGCAAATTCTGGGTTGGATAGAGCAGTGGAGGTTCTGGGGGTTTTGGCTAAGTGCAAGGAAGGTCGAGAAGAGATGCAATGGTTCAAGGGATGTGTGGAGATTTTGAGTCGTGTTTTGAGAAATGGATCACCAAGAGGAGTTCAATATGCTCTTCTAACTCTGGCTTCCCTTTGCTGCCATTGCGAACGGCTCTGCGGGGAGGCAAGAAGAGAAGGCATTTTGGGAATCTGTATGACATTGATTGATGATGATAGTGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGAAAGGAAACACCCCGTGA 1098 49.09 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARVSKRDSAVRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRSGNNREQKEAATALYAICSFPGNRLRVVECGAVPILLKLANSGLDRAVEVLGVLAKCKEGREEMQWFKGCVEILSRVLRNGSPRGVQYALLTLASLCCHCERLCGEARREGILGICMTLIDDDSEKIRANAANLIHILKGNTP* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2295256 2296353 + Chy2G026230.1 Chy02g00356 219804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00356 365 Gene3D - 211 364 IPR011989 -
Chy02g00356 365 SUPERFAMILY RING/U-box 3 72 - -
Chy02g00356 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Chy02g00356 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Chy02g00356 365 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Chy02g00356 365 Gene3D - 87 210 IPR011989 -
Chy02g00356 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Chy02g00356 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Chy02g00356 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Chy02g00356 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Chy02g00356 365 SMART arm_5 200 241 IPR000225 GO:0005515
Chy02g00356 365 SMART arm_5 118 158 IPR000225 GO:0005515
Chy02g00356 365 SMART arm_5 279 320 IPR000225 GO:0005515
Chy02g00356 365 SMART arm_5 242 278 IPR000225 GO:0005515
Chy02g00356 365 SMART arm_5 159 199 IPR000225 GO:0005515
Chy02g00356 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Chy02g00356 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00356 Chy-Chr2:2295256 Chy03g00196 Chy-Chr3:1826834 6.99E-55 dispersed
Chy02g00356 Chy-Chr2:2295256 Chy12g00185 Chy-Chr12:2245357 1.62E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00356 - - csv:101213883 665.225