Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00358 ATGGCAGAAGATTTTCAAGCTCCTGTTTGCGGCGATAATTGGTGGAACTCTTCCCGGAGTATGTTGGTCGCCGTCGGTGGGTTGTCCCCTTGTTCCGTCGGTATCGCTGACTTATCTTGGCCACCACAACCGCCCTCTGCGGCCACTGATTCCGTCAACAACAATTCCTCCATGCTTTTTCAAGATTATTCCACTTTTCAAATGATGGGTTTTGCTCTTTCTTCTTCTACCACTTCCGAACATTGGAATCAATCTCAAGATTTGCTTAATTCGAATGGAATTCCAACGAATTTCTCAAGTGAAAATGGATTGAAGCAAGGAAATGATGGAGATGATTATTTAAATTGTTCGTCCACAAATACAACAAATTGTCAAGGCGGTTTATTTCCTGTTGAGTCAAGTTTATATGGATACTCTTCTCCTTCAACTAAGTTGCTTCAAACTAATTTATATGAGGATGATAATTCTGATCCTCATTCTCTTTTCAATTCTACACCTTCAATTACCACTAATTCCACTACCTTCCCCACAAATATTAATCCTCCTAATCACTTATCTTTATCTTCAACCCCTAATTTTTCTTCTAATTACCTTGTTAAACCCTCACTTCCAAACCCACAACCTCACTTGCAATTCACAAACAATACTCCTTTTTGGAATGCATCTTCTTCCAATTCCATTCCTCAGGGTATTGCTTCCTTGCTTGAAGACAAAAATAACCCTAAATCCCAAAATAATACACTTGCTTTCAAGTCTATGAATGAAGATGGTCAAGATCAAGTGAAGAAAGGCGATAAAAACAGTGCAATAACGACTGAACCAACCGTGTTTAAAAGGCCTCGGATTGAAACTCCTTCACCATTGCCAACATTTAAGGTGCGGAAAGAGAAGCTAGGGGACCGAGTCACTGCCCTTCAACAACTGGTTTCACCGTTTGGAAAGACCGATACAGCCTCAGTTCTACACGAAGCCATTGAGTACATAAAGTTCCTCCACGATCAAGTCTTAAGCACACCATATATGAAAAGCAACAATGGAATAACACCCGTCCAACACCAACAGGTATCTGAAAAGGCAAACCATGATAGCCCAAAACAAGATCTGAAAAGCCGAGGCCTTTGCTTGGTGCCAATTTCAAGCACATTCCCAGTGACAAATGCAACCACCACAGATTTCTGGACACCGACGTTCGGCGGAACGTTCCGGTGA 1209 41.52 MAEDFQAPVCGDNWWNSSRSMLVAVGGLSPCSVGIADLSWPPQPPSAATDSVNNNSSMLFQDYSTFQMMGFALSSSTTSEHWNQSQDLLNSNGIPTNFSSENGLKQGNDGDDYLNCSSTNTTNCQGGLFPVESSLYGYSSPSTKLLQTNLYEDDNSDPHSLFNSTPSITTNSTTFPTNINPPNHLSLSSTPNFSSNYLVKPSLPNPQPHLQFTNNTPFWNASSSNSIPQGIASLLEDKNNPKSQNNTLAFKSMNEDGQDQVKKGDKNSAITTEPTVFKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVLSTPYMKSNNGITPVQHQQVSEKANHDSPKQDLKSRGLCLVPISSTFPVTNATTTDFWTPTFGGTFR* 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2306620 2308928 - Chy2G026250.1 Chy02g00358 219806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00358 402 PANTHER TRANSCRIPTION FACTOR BHLH112 11 389 - -
Chy02g00358 402 Gene3D - 292 354 IPR036638 GO:0046983
Chy02g00358 402 CDD bHLH_AtbHLH_like 288 335 IPR045239 -
Chy02g00358 402 MobiDBLite consensus disorder prediction 346 368 - -
Chy02g00358 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983
Chy02g00358 402 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 11 389 - -
Chy02g00358 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 336 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00358 Chy-Chr2:2306620 Chy04g00477 Chy-Chr4:4510075 3.42E-29 dispersed
Chy02g01841 Chy-Chr2:20697189 Chy02g00358 Chy-Chr2:2306620 6.08E-35 transposed
Chy07g01499 Chy-Chr7:19264481 Chy02g00358 Chy-Chr2:2306620 3.46E-30 transposed
Chy10g00019 Chy-Chr10:731682 Chy02g00358 Chy-Chr2:2306620 3.65E-29 transposed
Chy12g01004 Chy-Chr12:15260343 Chy02g00358 Chy-Chr2:2306620 2.07E-36 wgd
Chy02g00358 Chy-Chr2:2306620 Chy06g01777 Chy-Chr6:21098411 2.40E-37 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00358 - - csv:105435958 799.66