Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00384 ATGGCTACCCATCAGCCACTTCTTCTTCTTCAACCCCCCAAAACTTCCCGCTCCAAAACCATTCCCACAATCCTCTGTTTTGCTGCGCTTTTGTGCTCAGCCATTTTCATTACTAACAAGTTCATCAAACCAAACCCATCTGAAAATGATCTTCCCTTCCTTCAAAACATATGCCACAAGGCTTATGACCAATCATCTTGCATTGAAATGGCCGCCTCAGAATTTCCCTTGAGCATAATCAAAACCACGAACGAGGTTGATTTCTTACAGTCATTCCTGAGGAGATCCATGCCTAAAGTAATTAACACAATTGAGAGAGCCAAAGATCTCCGCCAAAGAATCAACAGCCCTCGCGGTGAAGCAGCTTTGGCCGATTGTATCGAGCTTATGGAGATTTCAAACGGCCGAATCATGGAATCTGTTTTGGCTCTGAAGAACAGAACGAGCGGCTCCATCGAAAATTCCCACACATGGCTGAGTAGCCTGCTGACAAACCACGTCACGTGCTGGGATGAGGTGGAGAGTTCATTATCGAGAGCGGCGGCAATGGATTTAGGGCTCGAGGAGTTGATTGTGAGAGGGAGAAACTCGTTGGGGATGTTGGTTTCGATTTGGGGATTGGACATTAAAAATCTGGGAGAGTTGGAGAAAAAGGGAAATGGGTATCCGAGTTGGTTGAAGAAAGGAGATCGGAGATTATTGGGAGTTTTGGGGAGAGAAATGGAACCGAATATCGTGGTGGCGAAGGATGGAAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAATCAGTTCCAGATAAGAGCAAGAACAGAATTGTTATATATGTGAAAAGGGGGACTTATGAGGAAAATGTGGAAGTGGGAAAGAAGAAAAAGAATGTAATGATCGTTGGAGATGGAATGGATTCCACCATTATCACCGGTAGCCTCAACGTCGTTGATGGATCAACAACTTTCAAATCTGCAACTGTAGCTGCGGTGGGAGATGGGTTTATAGCCCAAGACATTTGGTTCCAAAACACCGCCGGGCCGGAAAAGCACCAAGCCGTGGCGCTTCGGGTCGGAGCAGATCAATCGGTCATAAACCGGTGTCGTATCGACGCTTATCAGGACACACTCTACACACATTCCAACCGCCAATTCTACCGAGATTCCACCATCACCGGCACCGTCGACTTCATATTCGGTAACGCTGCCGTCGTTTTACAGAACTGTAAAATAGAGCCCCGACGACCGATGAACAACCAAGCCAACATGGTGACGGCGCAAGGCCGAATCGACCCAAATCAGAACACTGGAACTTCGATCCAGCAATGCGATATCGTGGCAAGCTCCGACTTGGAGCCGGTTAAGAAGTCGATTAAGACATATCTGGGGCGACCATGGAAGGAGTACTCGAGGACCGTCGTCATGCAGTCCAGAATTGGCGATCTTATTCAACCAGCGGGCTGGGCCGAATGGAATGGGGACTTTGCACTGAAAACTCTCTATTACGGGGAGTATTCAAATACTGGGCCAGGCTCCGATGTTAGCAAGCGAGTGAAGTGGGCCGGTTATCATGCCATTACGAGCCCATCTGAGGCCCAAAAGTTTACGGTGAACTCACTTATACAAGGAGGTGAATGGCTCGGCCCATCGGGCGCGACTTTTATCCCAGGGCTGTGA 1668 48.44 MATHQPLLLLQPPKTSRSKTIPTILCFAALLCSAIFITNKFIKPNPSENDLPFLQNICHKAYDQSSCIEMAASEFPLSIIKTTNEVDFLQSFLRRSMPKVINTIERAKDLRQRINSPRGEAALADCIELMEISNGRIMESVLALKNRTSGSIENSHTWLSSLLTNHVTCWDEVESSLSRAAAMDLGLEELIVRGRNSLGMLVSIWGLDIKNLGELEKKGNGYPSWLKKGDRRLLGVLGREMEPNIVVAKDGSGNFKTVKEAVESVPDKSKNRIVIYVKRGTYEENVEVGKKKKNVMIVGDGMDSTIITGSLNVVDGSTTFKSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYTHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMNNQANMVTAQGRIDPNQNTGTSIQQCDIVASSDLEPVKKSIKTYLGRPWKEYSRTVVMQSRIGDLIQPAGWAEWNGDFALKTLYYGEYSNTGPGSDVSKRVKWAGYHAITSPSEAQKFTVNSLIQGGEWLGPSGATFIPGL* 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2440962 2442720 + Chy2G026510.1 Chy02g00384 219832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00384 555 CDD PMEI-like_4 51 204 - -
Chy02g00384 555 Pfam Plant invertase/pectin methylesterase inhibitor 53 179 IPR006501 GO:0004857
Chy02g00384 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Chy02g00384 555 SMART PMEI_2 49 200 IPR006501 GO:0004857
Chy02g00384 555 Gene3D - 238 555 IPR012334 -
Chy02g00384 555 PANTHER PECTINESTERASE 14 554 - -
Chy02g00384 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Chy02g00384 555 PANTHER PECTINESTERASE 14 554 - -
Chy02g00384 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599|GO:0042545
Chy02g00384 555 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
Chy02g00384 555 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 174 IPR006501 GO:0004857
Chy02g00384 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 175 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00384 Chy-Chr2:2440962 Chy06g00857 Chy-Chr6:6182906 1.07E-153 dispersed
Chy02g00384 Chy-Chr2:2440962 Chy01g02125 Chy-Chr1:25934718 3.11E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00384 K01051 - csv:101216377 1088.17