Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00386 ATGGCATCTAACACAAGTGAGATTGCACTTATCTTTACGGAAGAATGCATTAAGCTTCTCCCAAGGGATTTCATATCAAATAATAAAGAAGCCAAATTTCTGGAAGTGAAGATGTTCGATCCAGATATGTTTGATACTACTCACCATCATATGCTTGAAGAGTTGGAAAATATGAGAGACGATGATTTTGACAACAAATCAGGTGCAGAAATCTTGGAATCTGCTTGTGGAACTGACCAACAACAACGTTCTAAAAAGAAACGTTACAATCGTCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTTAAGGAGTGTCCTCACCCAGATGATAAGCAGAGAATGGAGCTGAGTCGTGAGCTGGGGTTGGAGCCATTGCAAGTCAAGTTTTGGTTTCAAAACAAACGCACACAAATGAAGGCTCAACACGAGAGACATGAAAACGCAATATTGAAGGCGGAAAATGAGAAACTTCGTGCTGAGAATATACGCTATAGAGAAGCATTCGCTCATTCAACTTGCCCTAACTGCGGATCTTCCTCCACTGCACTCGGGGAAATGTCCTTTGACGACCAACATTTACGCATTGAAAATTCCCGCTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGCTCAAAATGCACAAAGCCATACTATCAGCTTCCAACAAATGCTCCAACGCGATCTTTAGACCTGGGCATCACTAACTTCGGTCCACAGTCGTCAGGATTCGTAGGGGAAATGTATGGAGCAGCAGACTTTTTTCGGTCGATATCGAGGCCTTCGGAAGGTGAGAAACCGGTGATCGTGGAGCTGGCGGTATCGGGGATGGAGGAGTTGAGGAGAATGGCTCAAGGAGGGGAGCCGTTGTGGATTGCGGGAGATGGGAAGTCATCAGGGGAAGTGGTTCTTAATGAAGCGGAGTATCTGAGGAGTTTCGGAGGGGGAATAGTGGGAAAGCCCATGGGCTTTAGAACCGAAGCTTCAAGAGTTTCGGCTGTGGTGTTCATGAACCATATGAAGTTGGTGGATATTTTTATGGATGCTACGCAATGGTCCACTGTGTTTTGCGGCATTGTTTCGAGAGCATCCACTGTGGAAATTCTTTCGCCTGGCTTACCTGGAAACTTCAATGGGGCCTTGCATGTGATGAGCGCTGAATTTCAAGTCCCATCGCCACTTGTTCCAACTCGTGAGAACTATTTCGTAAGATACTGCAAACAACAAACTGATGGTTCATGGGCTGTGGCTGATGTTTCCTTAGACACCTTGCGCCCTTCTCCCATCCCAAATACCCGAAGGAAACCCTCTGGTTGCTTAATTCAAGAATTACCCAACGGCTATTCCAAGATCACCTGGGTCGAACATGTAGAAGTCGACGAAACTGGCGTCCCCACAATGTACAGGACTCTTGTTAATTCTGGCCTCGCATTCGGGGCTAAGCGATGGGTTGCTACCTTAGATCGCCAATCTGAGCGTTTCGCTACTTCAATCGCCACCACCATTCCCGCCGGCGATATACGCGTGATCTCAAGTATTGAAGGGAGGAAGAGTATGCTGAAACTAGCAGAGAGAATGGTGACGAGCTTCTGCGCCGGTGTAGGTGCGTCCAGTGTACACGCTTGGACGGCATTACCCGCTGCAGCTGGCGATGAAGTACGTGTTGTGACGAGGAAGAGCACCGACGAACCAGGACGACCACCCGGTGTTGTGTTGAGCGCCGCCACTTCTTTTTGGATTCCGGTTTCACCTAAGGTTGTTTTTGATTTTCTTCGGAAAGAGAAATCTCGGAGCGAGTGGGATATTCTGTCAAATGGGGGATTGGTTCAGGAAATGGCGCACATAGCCAACGGCCGTCACCAAGGGAATTGTGTCTCCTTGCTTCGTGTTAATAGTGCGAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACGGACTCAACGGGATCGTACGTTATTTATGCTCCGGTGGACACCGTGGCAATGAACGTGGTGCTAAGTGGTTGCGATCCGGATTACGTGGCGCTTCTACCGTCGGGATTCGCCATACTTCCAGACGGACCCGGCGGAGGAGGAAACAACGGCGGCGGAATTCTAGAGCTGGGATCGGGTGGGTCACTCATCACGGTTGCATTCCAAATCCTGGTTGATTCGGTTCCAACGGCTAGACTTTCAATTGGATCAGTAGCCACCGTTAACAGTCTCATCAAATGCACGGTTGAGAGAATCAGAGCCGCTGTGATGCGTGAAAACCCATGA 2274 48.2 MASNTSEIALIFTEECIKLLPRDFISNNKEAKFLEVKMFDPDMFDTTHHHMLEELENMRDDDFDNKSGAEILESACGTDQQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENIRYREAFAHSTCPNCGSSSTALGEMSFDDQHLRIENSRLRDEIERMSGYGSKCTKPYYQLPTNAPTRSLDLGITNFGPQSSGFVGEMYGAADFFRSISRPSEGEKPVIVELAVSGMEELRRMAQGGEPLWIAGDGKSSGEVVLNEAEYLRSFGGGIVGKPMGFRTEASRVSAVVFMNHMKLVDIFMDATQWSTVFCGIVSRASTVEILSPGLPGNFNGALHVMSAEFQVPSPLVPTRENYFVRYCKQQTDGSWAVADVSLDTLRPSPIPNTRRKPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRTLVNSGLAFGAKRWVATLDRQSERFATSIATTIPAGDIRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAAGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVSPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHQGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGGNNGGGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP* 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2460284 2466682 + Chy2G026530.1 Chy02g00386 219834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00386 757 SMART HOX_1 84 147 IPR001356 GO:0003677
Chy02g00386 757 Gene3D - 74 159 - -
Chy02g00386 757 CDD homeodomain 85 144 IPR001356 GO:0003677
Chy02g00386 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 49 754 IPR042160 -
Chy02g00386 757 Coils Coil 137 169 - -
Chy02g00386 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 49 754 - -
Chy02g00386 757 SUPERFAMILY Bet v1-like 517 749 - -
Chy02g00386 757 SUPERFAMILY Bet v1-like 267 496 - -
Chy02g00386 757 SMART START_1 273 495 IPR002913 GO:0008289
Chy02g00386 757 Pfam Homeodomain 86 141 IPR001356 GO:0003677
Chy02g00386 757 SUPERFAMILY Homeodomain-like 77 143 IPR009057 -
Chy02g00386 757 Pfam START domain 275 495 IPR002913 GO:0008289
Chy02g00386 757 CDD START_ArGLABRA2_like 268 494 - -
Chy02g00386 757 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Chy02g00386 757 ProSiteProfiles START domain profile. 264 498 IPR002913 GO:0008289
Chy02g00386 757 Gene3D - 323 495 IPR023393 -
Chy02g00386 757 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00386 Chy-Chr2:2460284 Chy11g02014 Chy-Chr11:25991815 0 dispersed
Chy02g01690 Chy-Chr2:16905993 Chy02g00386 Chy-Chr2:2460284 1.99E-100 dispersed
Chy12g00776 Chy-Chr12:12088691 Chy02g00386 Chy-Chr2:2460284 5.18E-20 dispersed
Chy01g00419 Chy-Chr1:2952449 Chy02g00386 Chy-Chr2:2460284 0 wgd
Chy11g00599 Chy-Chr11:6948159 Chy02g00386 Chy-Chr2:2460284 0 wgd
Chy12g01045 Chy-Chr12:15645774 Chy02g00386 Chy-Chr2:2460284 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17443 PF01852 START 7.60E-48 CL0209 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00386 K09338 - csv:101209093 1409.05