Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00399 ATGGCTTGCTCAAAATTGGCAATGTGGGTATCCTCAAACCCGTCTTCATCCGATTCCTCAGCTCTTTTTTTTCGGCCAGTCAATCCTCTTCAAGTTCCTTCCCAAGGCTCCGCCTCGCGATCCTCATCTGTCACTCCCATTCAGTGCGGTCTACGTGAGCTTCGAGAACGGATCGATTCAGTGAAGAACACCCAGAAAATTACTGAGGCTATGAAGCTTGTTGCTGCTGCCAAAGTTCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCATTCTCGGAATCTCTAGTTGAAGTACTTTACAATATCAATGAGCAGCTCCAAACTGAGGATATAGATATTCCTCTGACTAAAGTTCGACCAGTCAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGAGGCCTCTGCGGCGGTTTCAATAACATGATCATAAAAAAGGCAGAATCTAGAATCGCAGAATTGAAGACCCTTGGCCTTGATTATACAATTATTAGCGTCGGCAAGAAGGGGAATTCATATTTTTTTCGCCGGCCTTACATCCCAGTAGATAGATTTCTTGAGGGCGGTTCACTCCCAACGGCCAAAGAAGCTCAAGCCATTGCAGATGATGTTTTTTCCCTCTTTATAAGCAAAGAGGTTGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTAGTTAAATCAAACCCTGTGATCCACACTTTGCTTCCATTGTCACCTAAAGGAGAGATCTGTGATATAAATGGTGTTTGTGTTGATGCCGCAGAGGATGAGTTCTTCAGATTGACGACAAAAGAAGGAAAATTGACCGTAGAGAGAGATGCCGTGAGGACAAAAACTTCAGATTTCTCCCCAATTTTGCAGTTTGAGCAAGATCCAGTTCAGATTCTTGATGCTTTATTACCTCTCTATTTGAACAGTCAAATTTTGAGATCATTGCAGGAATCGTTAGCTAGTGAACTTGCTGCTAGAATGAGTGCCATGAGCAATGCAACTGATAATGCCAGTGAGTTGAAGAAGACATTGTCTATTGTTTACAACAGACAGCGGCAAGCCAAAATCACTGGTGAGATTTTGGAGATTGTTGCCGGTGCCAACGCTTTGACTTGA 1116 43.28 MACSKLAMWVSSNPSSSDSSALFFRPVNPLQVPSQGSASRSSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDIPLTKVRPVKKVALIVVTGDRGLCGGFNNMIIKKAESRIAELKTLGLDYTIISVGKKGNSYFFRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISKEVDKVELLYTKFVSLVKSNPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT* 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2536085 2537200 + Chy2G026660.1 Chy02g00399 219847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00399 371 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 50 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy02g00399 371 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy02g00399 371 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy02g00399 371 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy02g00399 371 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy02g00399 371 Coils Coil 51 71 - -
Chy02g00399 371 Pfam ATP synthase 51 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy02g00399 371 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Chy02g00399 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy02g00399 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 49 117 - -
Chy02g00399 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 370 - -
Chy02g00399 371 CDD F1-ATPase_gamma 51 367 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy02g00399 371 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986|GO:0045261|GO:0046933
Chy02g00399 371 Gene3D - 118 241 - -
Chy02g00399 371 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 370 IPR035968 GO:0015986|GO:0045261|GO:0046933
Chy02g00399 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00399 Chy-Chr2:2536085 Chy12g01502 Chy-Chr12:18836503 3.20E-25 dispersed
Chy06g01816 Chy-Chr6:21860343 Chy02g00399 Chy-Chr2:2536085 2.45E-156 transposed
Chy12g01065 Chy-Chr12:15792888 Chy02g00399 Chy-Chr2:2536085 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00399 K02115 - csv:101218747 689.878