Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00408 ATGGTAAGAAAACTGAGCTTCTACAATGGGGAGGAAGAAGCTGAGGCTGCAAAATCAAGGCTCCCATGTTATATTGGACAACGGGTTGTTGAAGGTGACAATATCAAACCCCCAAGGGTATATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGTACGCTGCCTTCATTAGATTGGCTTAAGGGATCTGAATTCAATGTCATCAACTCAAGTGATGACACGATCGAGATATCATTCAGGAAAGATTTTGACCCGTCAACTCGAGGCAACAAACTTCCACTTGGTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGAATGTCGAGCTTTCGATCTTGCTCAGACAAGAATGGTGTTTAAGCTGCGACAAGAGAAGTTCCACTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCGTCCAGGCAGAGGTGAAGAACTAATTGTACCTGAGTCAGTTTTGCTTGTAAATCCCATTAACCCTGATTTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGGAGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGATAGTTTTTCCAAGCCACGAGTTCCGAAATGGAGGTCCTACAAAGCAAAATCTGACAGTCCATACTGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATCAAGGAGGGAGAGGCATGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATCTATGGATAGATGCAAAAGAACAGAGAATGCAAGAGGAAACAGCATGGCCGTACAATTTTGTTGCTTCATCTTTTTATTTAATGGCAAGGGAACGTGGTTCAATTTCAGGAAGACTATTAGTCCGAGACAGGTTTGTTTCAAGTTCCCCTATCCCTGCAAGAGATGCACATATTGGTCTATCTGCTGCTAGAGAAGAAGGTGCCTGGCAAATCGAAAGCAAGGAATATCAATTTTGGGTAAAAACAGATTCCAATGGAGATTTCACTATCAGAAACATTATTCCTGGAGTTTATGGACTTCATGGTTGGGTACCAGGATTCATTGGTGACTATCTTCACAAATCACTAGTAACAGTATCTGCAGGATCTTATACCCATCTTGGCATTCTGACCTATAGTCCTCCCAGAGACGGTCCTACTGTATGGGAGATTGGTTTTCCTGATCGTACTGCTAATAGCTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGTTATTCCTTCATAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGAGGGATACAGCGATTTACATCCAAGAAATGACCAAATTTTCACCGTGGGTATCAACGATCCAAAAAAAGATTGGTTCTTTGCTCAAGTTTGCAGAAGAGGGGAAGATGGTAAGTATGTTGCGACTACATGGACTATTAAGTTCAACATGACATCCTTAACTGATGGAACTTACAGGCTGAGGTTGTCCATTGCATCTGCAACACGCTCGGATTTGAAGATTAATGTCAACTCGATGGGCTCAGAATCATCTCTGGTCTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAAATCATGGATTGTATCGAATTTATAGCATCGACATTCCATCTTCAATGCTGGTGAAGGGAGATAATTGCATATTTCTCACGCAGGCAAGGAATGGAGATCCACTCTGTGGAATTTTATACGATTATTTAAGATTGGAAGCACCTGATGCTACTCCATGA 1890 42.01 MVRKLSFYNGEEEAEAAKSRLPCYIGQRVVEGDNIKPPRVYIGISTGVGLEARTDTNCTLPSLDWLKGSEFNVINSSDDTIEISFRKDFDPSTRGNKLPLGVDIRYIMRTGIPGFYCYAIYEHPSECRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLRPGRGEELIVPESVLLVNPINPDLKGEVDDKYQYSEDNKDGGVHGWISSSPNNIGFWIVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGEAWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRMQEETAWPYNFVASSFYLMARERGSISGRLLVRDRFVSSSPIPARDAHIGLSAAREEGAWQIESKEYQFWVKTDSNGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSYTHLGILTYSPPRDGPTVWEIGFPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWEGYSDLHPRNDQIFTVGINDPKKDWFFAQVCRRGEDGKYVATTWTIKFNMTSLTDGTYRLRLSIASATRSDLKINVNSMGSESSLVFQLMNLGMDNTVCRHGNHGLYRIYSIDIPSSMLVKGDNCIFLTQARNGDPLCGILYDYLRLEAPDATP* 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2571672 2575265 - Chy2G026750.1 Chy02g00408 219856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00408 629 CDD RGL4_N 55 292 - -
Chy02g00408 629 Gene3D - 322 423 - -
Chy02g00408 629 Gene3D - 432 622 - -
Chy02g00408 629 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 64 626 - -
Chy02g00408 629 CDD RGL4_C 436 623 - -
Chy02g00408 629 SUPERFAMILY Starch-binding domain-like 321 423 IPR013784 GO:0030246
Chy02g00408 629 SUPERFAMILY Galactose-binding domain-like 431 623 IPR008979 -
Chy02g00408 629 Pfam Polysaccharide lyase family 4, domain III 434 622 IPR029411 -
Chy02g00408 629 CDD RGL4_M 325 422 IPR029413 -
Chy02g00408 629 Pfam Rhamnogalacturonate lyase family 62 193 IPR010325 -
Chy02g00408 629 PANTHER POLYSACCHARIDE LYASE FAMILY 4 PROTEIN 64 626 - -
Chy02g00408 629 Gene3D - 27 296 IPR014718 GO:0030246
Chy02g00408 629 Pfam Polysaccharide lyase family 4, domain II 354 420 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00408 Chy-Chr2:2571672 Chy04g00197 Chy-Chr4:1750002 0 dispersed
Chy02g00408 Chy-Chr2:2571672 Chy03g01323 Chy-Chr3:16226937 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00408 K18195 - csv:101220336 1171.76