Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00418 ATGGCTTTCCCATTATTATTATCAACATTCCTCCTTTTCCTACCCACAGTTATCTCCACGCCCAAACCCAACAACTACTATAGCAAACCATCCCTCAACCCCATCGACGCATGCTGGCGGAACAACCGCAATTGGGCAGCCAACCGCCGTGCCCTGGCGGACTGTGCCGTTGGGTTTGGCAGCGACGCTTTGGGAGGCAAATTCGGGTCAATCTACGTAGTCACAGACCCATCGGACGACCCGGAATATCCAGAACCCGGAACACTGCGTTTTGGGGTGATCCAAATGCAGCCATTATGGATTGTGTTCGCAAGAGATATGGTGATTACTCTTAAGAGAGAATTGATGGTGAATAGCTATAAGACTATAGACGGGCGAGGAGCAAACGTGGAAATTAGCAATGGGCCTTGTATTACGATCCAAAATGTGAGCCACGTCATAATCCACGGGATCAGCATTCATGATTGTAAGCCGGGGAAGCCTGGACGCGTGAGGAGCTCGGTGACTCATTGTGGTGACCGCCAACAATCGGACGGTGACGCCATTTCTATATTCAGTTCTTCACATATTTGGATCGACCATTGCTATTTGGCTCGATGTACTGATGGGCTCATTGACGTCATTCATGCCTCCACTGCTGTCACCATCTCCAATAATTACTTCTCTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGAATTTAGAGATGATAGAATCATGAGAGTGACGGTAGCTTTCAATCGTTTCGGGGCTGGACTTGTTCAAAGAATGCCTAGGGTGAGATTTGGGTATGCTCATGTTGCCAATAATTGGTACAACAAATGGGAAATGTATGCGATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAATTACTTCATGGCTCCTAACGATCCGTTCTCAAAGCAGGTAACAAAGCGAGAGGTTTATGAGAGTGGATGGAAGTCGTGGAAATGGAGATCTTCAAATGATGTGTTTATGAATGGGGCTTATTTCATCCCAACAGGGTGGGGATCTTGTACGCCTTTCTACACCCAAGCTCAAGCTTTTCCTGTTGCTCATGGCTCTTTAGCTCCTCTTTTGACTATTGCCGCCGGCCCTTTGCCTTGTGTTCTTGCCAAACCTTGTTGA 1143 47.42 MAFPLLLSTFLLFLPTVISTPKPNNYYSKPSLNPIDACWRNNRNWAANRRALADCAVGFGSDALGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQMQPLWIVFARDMVITLKRELMVNSYKTIDGRGANVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSSVTHCGDRQQSDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFRDDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPNDPFSKQVTKREVYESGWKSWKWRSSNDVFMNGAYFIPTGWGSCTPFYTQAQAFPVAHGSLAPLLTIAAGPLPCVLAKPC* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2640386 2642277 - Chy2G026850.1 Chy02g00418 219866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00418 380 PANTHER PECTATE LYASE 18-RELATED 18 378 IPR045032 GO:0030570
Chy02g00418 380 SMART amb_all 106 303 IPR002022 -
Chy02g00418 380 Gene3D - 32 373 IPR012334 -
Chy02g00418 380 Pfam Pectate lyase 113 297 IPR002022 -
Chy02g00418 380 PANTHER PECTATE LYASE 18 378 - -
Chy02g00418 380 PRINTS Pollen allergen Amb family signature 321 345 IPR018082 -
Chy02g00418 380 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Chy02g00418 380 PRINTS Pollen allergen Amb family signature 114 130 IPR018082 -
Chy02g00418 380 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Chy02g00418 380 PRINTS Pollen allergen Amb family signature 55 72 IPR018082 -
Chy02g00418 380 PRINTS Pollen allergen Amb family signature 78 103 IPR018082 -
Chy02g00418 380 PRINTS Pollen allergen Amb family signature 351 374 IPR018082 -
Chy02g00418 380 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
Chy02g00418 380 SUPERFAMILY Pectin lyase-like 53 377 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00418 Chy-Chr2:2640386 Chy05g00262 Chy-Chr5:2297202 1.85E-147 dispersed
Chy08g00790 Chy-Chr8:15533000 Chy02g00418 Chy-Chr2:2640386 4.50E-51 dispersed
Chy12g01566 Chy-Chr12:19226884 Chy02g00418 Chy-Chr2:2640386 2.08E-101 dispersed
Chy12g01100 Chy-Chr12:16015940 Chy02g00418 Chy-Chr2:2640386 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00418 K01728 - csv:101210816 771.926