Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy02g00418 | ATGGCTTTCCCATTATTATTATCAACATTCCTCCTTTTCCTACCCACAGTTATCTCCACGCCCAAACCCAACAACTACTATAGCAAACCATCCCTCAACCCCATCGACGCATGCTGGCGGAACAACCGCAATTGGGCAGCCAACCGCCGTGCCCTGGCGGACTGTGCCGTTGGGTTTGGCAGCGACGCTTTGGGAGGCAAATTCGGGTCAATCTACGTAGTCACAGACCCATCGGACGACCCGGAATATCCAGAACCCGGAACACTGCGTTTTGGGGTGATCCAAATGCAGCCATTATGGATTGTGTTCGCAAGAGATATGGTGATTACTCTTAAGAGAGAATTGATGGTGAATAGCTATAAGACTATAGACGGGCGAGGAGCAAACGTGGAAATTAGCAATGGGCCTTGTATTACGATCCAAAATGTGAGCCACGTCATAATCCACGGGATCAGCATTCATGATTGTAAGCCGGGGAAGCCTGGACGCGTGAGGAGCTCGGTGACTCATTGTGGTGACCGCCAACAATCGGACGGTGACGCCATTTCTATATTCAGTTCTTCACATATTTGGATCGACCATTGCTATTTGGCTCGATGTACTGATGGGCTCATTGACGTCATTCATGCCTCCACTGCTGTCACCATCTCCAATAATTACTTCTCTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGAATTTAGAGATGATAGAATCATGAGAGTGACGGTAGCTTTCAATCGTTTCGGGGCTGGACTTGTTCAAAGAATGCCTAGGGTGAGATTTGGGTATGCTCATGTTGCCAATAATTGGTACAACAAATGGGAAATGTATGCGATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAATTACTTCATGGCTCCTAACGATCCGTTCTCAAAGCAGGTAACAAAGCGAGAGGTTTATGAGAGTGGATGGAAGTCGTGGAAATGGAGATCTTCAAATGATGTGTTTATGAATGGGGCTTATTTCATCCCAACAGGGTGGGGATCTTGTACGCCTTTCTACACCCAAGCTCAAGCTTTTCCTGTTGCTCATGGCTCTTTAGCTCCTCTTTTGACTATTGCCGCCGGCCCTTTGCCTTGTGTTCTTGCCAAACCTTGTTGA | 1143 | 47.42 | MAFPLLLSTFLLFLPTVISTPKPNNYYSKPSLNPIDACWRNNRNWAANRRALADCAVGFGSDALGGKFGSIYVVTDPSDDPEYPEPGTLRFGVIQMQPLWIVFARDMVITLKRELMVNSYKTIDGRGANVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSSVTHCGDRQQSDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYFSQHDKVILLGHNDEFRDDRIMRVTVAFNRFGAGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPNDPFSKQVTKREVYESGWKSWKWRSSNDVFMNGAYFIPTGWGSCTPFYTQAQAFPVAHGSLAPLLTIAAGPLPCVLAKPC* | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2640386 | 2642277 | - | Chy2G026850.1 | Chy02g00418 | 219866 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy02g00418 | 380 | PANTHER | PECTATE LYASE 18-RELATED | 18 | 378 | IPR045032 | GO:0030570 | |
Chy02g00418 | 380 | SMART | amb_all | 106 | 303 | IPR002022 | - | |
Chy02g00418 | 380 | Gene3D | - | 32 | 373 | IPR012334 | - | |
Chy02g00418 | 380 | Pfam | Pectate lyase | 113 | 297 | IPR002022 | - | |
Chy02g00418 | 380 | PANTHER | PECTATE LYASE | 18 | 378 | - | - | |
Chy02g00418 | 380 | PRINTS | Pollen allergen Amb family signature | 321 | 345 | IPR018082 | - | |
Chy02g00418 | 380 | PRINTS | Pollen allergen Amb family signature | 258 | 277 | IPR018082 | - | |
Chy02g00418 | 380 | PRINTS | Pollen allergen Amb family signature | 114 | 130 | IPR018082 | - | |
Chy02g00418 | 380 | PRINTS | Pollen allergen Amb family signature | 280 | 299 | IPR018082 | - | |
Chy02g00418 | 380 | PRINTS | Pollen allergen Amb family signature | 55 | 72 | IPR018082 | - | |
Chy02g00418 | 380 | PRINTS | Pollen allergen Amb family signature | 78 | 103 | IPR018082 | - | |
Chy02g00418 | 380 | PRINTS | Pollen allergen Amb family signature | 351 | 374 | IPR018082 | - | |
Chy02g00418 | 380 | PRINTS | Pollen allergen Amb family signature | 178 | 199 | IPR018082 | - | |
Chy02g00418 | 380 | SUPERFAMILY | Pectin lyase-like | 53 | 377 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00418 | Chy-Chr2:2640386 | Chy05g00262 | Chy-Chr5:2297202 | 1.85E-147 | dispersed | |
Chy08g00790 | Chy-Chr8:15533000 | Chy02g00418 | Chy-Chr2:2640386 | 4.50E-51 | dispersed | |
Chy12g01566 | Chy-Chr12:19226884 | Chy02g00418 | Chy-Chr2:2640386 | 2.08E-101 | dispersed | |
Chy12g01100 | Chy-Chr12:16015940 | Chy02g00418 | Chy-Chr2:2640386 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy02g00418 | K01728 | - | csv:101210816 | 771.926 |