Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00425 ATGGATGTTCCAAGTGGGAATTGTTCTGGAGGTATGATGAATTTTGGTGACCAAAATAATAATAACAACAACAACAACAATAATGGGTTATGTTCTATGATGATGATGATGCCATTAATCTCTGCTTCTCAACAAGGTGGAGATGGTTCTTCATGTACTCCATTTTTTCCTCTTCCTCCTCCTAATTACAACAACAACAACAACAACAACAATACTTCTATTTGTAATTACTTCATGGAAGAAACCAACAACAACAACAACGACGAGAGTAGTAATGGCGCCAATTCTTGTTGTGAAGTGGGGGCGCCGCCGGAAGTGGTGGCGCGGCTTGAAGAAGCGTGTGCTAGTGCGGTAACAATGAGTAGTGGTAATAATGGTGGTGGGTGTATAGGGGAAGATCCAGCGCTTGATCAGTTTATGGAAGCTTATTGTGAGATGCTTACCAAATATGAACAAGAACTTTCCAAACCCTTTAGAGATGCTATGCTTTTTCTTCAACGAATTGACTCTCAATTCAAAGCTCTCTCTATTTCCTCCTCTCATCTCCCTCCAGCTTGTGGCGAGGCGTTTGATAGGAACGGATCATCTGAAGAGGAAGTTGATATCAATGGGCACTCGATCGACCCACAAGCAGAAGATCGTGAACTGAAAGGTCAGCTCCTGCGCAAATACAGTGGATACTTAGGCAGTTTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGTTACCTAAGGAAGCCAGACAACAACTTCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCACAGAAGTTAGCTTTAGCTCAATCAACGGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAACCAAAGAAAAAGACACTGGAAACCATCTGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGATACTCGACAACTGCAAGGGTTTGAGGCAATTTCTCCCGATTTCTCCCGATTAGGGGTTCACGCCATCTCTCTCTATTTCTCCCGATTAGGGTTTCGCGGCTCCACCTTTAAAGCATCCGAAAAAGATCGACCATGTAAAAGTGTTCACATCACACCAGCAATTGAGGCCCAAATTTGA 1128 42.55 MDVPSGNCSGGMMNFGDQNNNNNNNNNNGLCSMMMMMPLISASQQGGDGSSCTPFFPLPPPNYNNNNNNNNTSICNYFMEETNNNNNDESSNGANSCCEVGAPPEVVARLEEACASAVTMSSGNNGGGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHLPPACGEAFDRNGSSEEEVDINGHSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTRQLQGFEAISPDFSRLGVHAISLYFSRLGFRGSTFKASEKDRPCKSVHITPAIEAQI* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2674152 2678717 - Chy2G026920.1 Chy02g00425 219873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00425 375 SMART ELK_2 215 236 IPR005539 GO:0003677
Chy02g00425 375 CDD homeodomain 247 299 IPR001356 GO:0003677
Chy02g00425 375 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Chy02g00425 375 SUPERFAMILY Homeodomain-like 237 311 IPR009057 -
Chy02g00425 375 SMART HOX_1 237 302 IPR001356 GO:0003677
Chy02g00425 375 Gene3D - 240 302 - -
Chy02g00425 375 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 323 - -
Chy02g00425 375 Pfam KNOX2 domain 129 175 IPR005541 GO:0003677|GO:0005634
Chy02g00425 375 Pfam ELK domain 215 236 IPR005539 GO:0003677
Chy02g00425 375 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
Chy02g00425 375 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
Chy02g00425 375 PANTHER - 11 323 - -
Chy02g00425 375 SMART KNOX2_2 126 177 IPR005541 GO:0003677|GO:0005634
Chy02g00425 375 ProSitePatterns 'Homeobox' domain signature. 273 296 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00425 Chy-Chr2:2674152 Chy07g00220 Chy-Chr7:1794759 1.49E-78 dispersed
Chy01g00454 Chy-Chr1:3263812 Chy02g00425 Chy-Chr2:2674152 2.92E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17446 PF03791 KNOX2 6.00E-20 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00425 - - csv:101211566 573.163