Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00490 ATGTTTCCCAGACTTGTTAATCCCGACGGAGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCTGACCTCACCCACACTCACCGTGGAGACCCTTGTCTGGTTTTGACTTCAGATCCCAAACCTCGCCTCCGATGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTTACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCTGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATACCTTTTAGAAAGTCCAAGTACCAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTGCAAAGTAAATTGCATCTGCAAGTTGAGGCAGAGAAGCACCTACAAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGTAGGTGCAGTTTCAGACTCAGACAGCAAGAAGTCCGAAGGACAGGATCGTAAGAGCCCGAGAAGTACTTCCATCGACCCACTTGGTTTCTACACCACGCAATCACAAGAGATGGAAAGAGTGAATGGCACAGAAGAAGTGCAGGCTAATCTTCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCAAACGAGAGTCCCGGGGGATTGGCTATGGAAAAATCTCCTGCTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTCCATCTTTGATTTGGAGTGGAGCTAAGGAAGGAATACAAAATGCTAACATCATCCAAGTTAACCATCACAGCGTGTCCGGATGCAACATGTGGGGATAA 942 46.71 MFPRLVNPDGDIQIHGPRGSVASDLTHTHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLQIRQDAERRYLAMLERACKMLADQFIVGAVSDSDSKKSEGQDRKSPRSTSIDPLGFYTTQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPAASKKNMVNLDSATPSLIWSGAKEGIQNANIIQVNHHSVSGCNMWG* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3000544 3004925 + Chy2G027570.1 Chy02g00490 219938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00490 313 Gene3D - 41 99 - -
Chy02g00490 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 18 303 IPR044848 GO:0003700
Chy02g00490 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Chy02g00490 313 MobiDBLite consensus disorder prediction 1 20 - -
Chy02g00490 313 MobiDBLite consensus disorder prediction 193 215 - -
Chy02g00490 313 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Chy02g00490 313 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 18 303 - -
Chy02g00490 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Chy02g00490 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00490 Chy-Chr2:3000544 Chy06g00365 Chy-Chr6:2434197 1.84E-67 dispersed
Chy02g00490 Chy-Chr2:3000544 Chy02g00491 Chy-Chr2:3008442 3.63E-35 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17450 PF00249 Myb_DNA-binding 8.50E-06 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00490 - - csv:105435941 615.535