Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00531 ATGAGTTCCTGTCCAATTCAAGACTTCAGCTTGCTGCCGCCGGGGTTCGTTGATCCAGAACAAACATCTCCCGTTTGGAATAACAAGGCTGACAATGCATGGCAGCTCACAGCAGCCACCATGGTCGGTCTACAAACTGTTCCCGGGCTGGTCATTCTCTATGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCTGCCTTCATGGCCCTCTATGGCTTTGCAGCAGTGCTTGTCTGTTGGGTTTTGTGGGCACATCGTATGGCATTCGGCAAACGATTGTTGGGGATCGTTGGTAAGCCAGGCCCAGCTCTGTCTGAATCGTACCTTCTTTCACAGTCTACACAAGGCTGTTTTCCGATGGCTGACTACGTGTTTTTCCAGTTTGCTTTTGCTGCCATTACTGTTGTGTTGCTTGCCGGGTCCTTGCTGGGAAGGATGAATTTTGGTGCATGGATGCTTTTTGTTCCAATGTGGCTCACTCTTTGTTATACTGTGGGGGCATTTTGTATATGGGGAGATGGATTTATTCAAAAGTACCTCATTGACTACGCCGGCGGCTACGTCATTCATCTTTCTTCTGGGGTTGCTGGATTCACTGCTGCTTACTGGGTCGGGCCACGACACTCCCATGACAGGCAGAACTTCCCACCAAACAACATACTGCACATGGTTGGGGGTGCAGGGTTTCTTTGGCTGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCAGGTCGTATTACATCGCTGGCCATTTTGAACACACATGTTTGCACCGCAACAAGTCTCTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGTGCAGTTCAAGGGATCATCACTGGCCTTGTTTGCATCACTCCTGGGGCAGGGCTCGTGGACACTATTGCAGCTGTGGTGATGGGCGTTCTTGCCGGTTTGGTTCCATGGTACACCATGATGGTGCTGCATAGGAGGTTGGCATTCCTTCAGTGTGTTGACGATACTCTGGGGGTCTTCCACACGCATGCGGTGGCTGGTTCCATGGGGGGACTTCTCACAGGCTTCTTTGCCAAACCCAGCCTTCTGAGAATGATGTATCCAGATTCCCTATACGGACCAGGCTTCCTGTATGCCATTTCTGATAAAAAGCTCAAAGACGGCCTCAAACAAATCGGCATCCAGTTCGCAGGAGCGGTGTTTATTACCCTCTGGAATGCAATATTTACCAGTATTATATGTTACCTGATTAGCCATATTGTTAACTTAAGGATGAACGAAGAGGACCTGGAGATTGGTGATGATGCAGCTCATGGAGAAGAACCCTACGCGTTGTGGGGTGACGGTGAAAAGATGCCATCTTCATTTCGTCTTCCACACACACCTAGGTTTCCTACATTATGCAGGTGGGATTAG 1422 49.09 MSSCPIQDFSLLPPGFVDPEQTSPVWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHRMAFGKRLLGIVGKPGPALSESYLLSQSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFGAWMLFVPMWLTLCYTVGAFCIWGDGFIQKYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSHDRQNFPPNNILHMVGGAGFLWLGWTGFNGGAPFAAGRITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAGLVDTIAAVVMGVLAGLVPWYTMMVLHRRLAFLQCVDDTLGVFHTHAVAGSMGGLLTGFFAKPSLLRMMYPDSLYGPGFLYAISDKKLKDGLKQIGIQFAGAVFITLWNAIFTSIICYLISHIVNLRMNEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPTLCRWD* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3198504 3200122 + Chy2G027980.1 Chy02g00531 219979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00531 473 Gene3D Ammonium transporter AmtB like domains 17 448 IPR029020 -
Chy02g00531 473 Pfam Ammonium Transporter Family 33 445 IPR024041 GO:0008519|GO:0016020|GO:0072488
Chy02g00531 473 ProSitePatterns Ammonium transporters signature. 183 208 IPR018047 GO:0008519|GO:0016020|GO:0072488
Chy02g00531 473 PANTHER AMMONIUM TRANSPORTER MEP2 11 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
Chy02g00531 473 TIGRFAM amt: ammonium transporter 31 445 IPR001905 GO:0008519|GO:0016020|GO:0072488
Chy02g00531 473 PANTHER AMMONIUM TRANSPORTER 11 471 - -
Chy02g00531 473 SUPERFAMILY Ammonium transporter 26 427 - -
Chy02g00531 473 PRINTS Rhesus blood group protein signature 308 326 IPR002229 GO:0005887
Chy02g00531 473 PRINTS Rhesus blood group protein signature 253 275 IPR002229 GO:0005887
Chy02g00531 473 PRINTS Rhesus blood group protein signature 222 240 IPR002229 GO:0005887
Chy02g00531 473 PRINTS Rhesus blood group protein signature 128 144 IPR002229 GO:0005887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00531 Chy-Chr2:3198504 Chy03g01149 Chy-Chr3:14748208 0 dispersed
Chy02g00531 Chy-Chr2:3198504 Chy06g00417 Chy-Chr6:2834934 2.43E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00531 K03320 - csv:101218977 965.296