Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00534 ATGGCGGAAAGTTTAGAAGAGGTCTACCTCCATGGCGATCTCGACCTTAAAATCATTGCCGCCGTTCATTTGCCTAACATGGACATTGTATCTGAGCATCTTCGTCGTTGCTTCACAGCCTGTGGCACTGTCAATTACTCTGCCATTAAATCCGTCGCAACCAAATCCCGTTCTGCTGCTGGTGAGGAGAAAGCCCACCATAGCCGTGGAAAAATTATCACCAGTGATCCATATGTTACCGTCCGGGTTCCTCAAGCCACCGTCGCTCGGACTCGGGTCATAAAAAATTCCCAGAATCCCCATTGGAACGAGCATTTCGTTATCCCTCTTGCACAGAAGATGGCCGAGTTGGAATTTCAGGTGAAAGACGATGATGTCTTTGGGGCTGAAGTTATGGGGACGGTCAAAATCCCTGCTCAGGACATTGCTTCCGGTAAGATAATTAGTGGGTGGTATACGGTGATTGGCTCAAATGGCAAGCCACCGAAGCCTGACACTGCACTTCGAATCGAAATGAAGTTCACCTCAGTTGAAGAAAATCCGATATATCGACATGGCATTGCTGGAGATCCCGAGCATAGGGGCGTGCAGCACACTTATTTTCCTGTCAGGAAAGGGAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTACTGCCGCAGATTGAATTGGATGAAGGGAATGTTTATAGACAAGAGAAATGTTGGGAGGATATCTGCTATGCTATATCAGAGGCTCATCATATGATTTATATCGTCGGTTGGTCCGTTTTTCATAAGGTGAAGCTGGTTAGAGAGCCAACCAGGCCGTTACCACGAGGTGGAGACTTGACTCTTGGTGAACTCCTGAAATACAAATCAGAAGAGGGTGTCAGAGTTCTGATGATGATTTGGGATGACAAGACTTCTCATGATAAGTTGTTCATCAACACGGAAGGATTGATGCAGACACATGACGAGGAAACCAGAAATTTTTTTAAACATTCTTCTGTGATCTGTGTGCTCTCACCTCGCTATCCGAGCGGCAAGCTAAGCTATGTGAAACAAAAGGTTGTAGGAACTGTCTTCACACACCATCAAAAGTGTGTCCTTGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCTTTTCTTGGAGGTCTTGATCTCTGCGATGGTCGTTATGATACACCTGAGCATCGATTGTTTCATGACCTTGACACAGTATTTAAGGATGATTTTCATAATCCTACAATTCCTCCTGGAGCCAAAGCACCAAGGCAACCATGGCATGATTTGCACTGTAGGCTTGATGGACCAGCTGCTTATGACTTGCTTATAAACTTTGAGCAACGTTGGAACAGAGCCACAAGATGGACAGAGTTTGGACTACGGTGCAGGAGAATTACTCACTGGCATGATGCTTTGATAAAGATAGAGCGTATTTCGTGGATACTAAGCCCTCAAGTAATTCTCTTAGAAGACGGTTCGATAAAAGTTCCAGAAGATGACCCAAAAGTATATGTTTCAAAGGAAGAAGATCCTGAAAATTGGCATGTTCAGATATTTCGATCCATTGACTCTGGTTCAGTTAAAGGATTTCCAAAAGATGTCCATCTCGCCGAGTCACTGAACCTTGTTTGTGCTAAAAACCTGGCTATTGAGAAAAGCATTGAAATGGCATATATCCAAGCTATCAGATCGGCGCAGCATTTTATTTATATCGAAAATCAGTACTTTATTGGATCATCATATGGATGGCCAGGATATAAAAATGCCGGGGCTGATAATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCGAGCAAAATAAGAGCCAAGGAAAGGTTTGTTGTATATATCGTCATACCAATGTGGCCTGAGGGAGATCCAAACAGCGGTCCCATGCAAGAGATCCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAATTGAAGTCATCAGGGCAACCAGATTTGCACCCTCAAGACTTCCTAAATTTTTACTGCCTTGGAAAACAAGAAGAAATTCCCGAGAATGGGCCAACCACTGATGATCCAACGGCGTGTAATTCACTAAAAAATCGACGGTTTATGATTTACGTGCATGCCAAGGGGATGATAGTAGATGATGAATACGTAATTATTGGGTCTGCAAATATTAACCAAAGATCTATGGCTGGAACAAAGGACACAGAGATAGCCACGGGCGCATATCAGCCGCATCATACGTGGGTGAAGAAAAAGAAGCATCCACACGGTCAGATTTATGGATACAGAATGTCGTTGTGGAGTGAGCATCTTGGAATGCTAAATCCATGTTTTGAGGAGCCAGAAACTTTGGAATGTGTCAGAAAAATCAATGGGATTGCTGAGGATAACTGGAACAGATTTGCAGACAATGAATTCCGGACGTTGCAAGGCCACCTTCTCAGGTATCCGGTGCTCGTGGACGATGATGGGAAAATCAACCCTCTGCCAGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGTTCTCATTCAGCTGCAATTCCTGATGTTTTGACCACATAG 2574 44.06 MAESLEEVYLHGDLDLKIIAAVHLPNMDIVSEHLRRCFTACGTVNYSAIKSVATKSRSAAGEEKAHHSRGKIITSDPYVTVRVPQATVARTRVIKNSQNPHWNEHFVIPLAQKMAELEFQVKDDDVFGAEVMGTVKIPAQDIASGKIISGWYTVIGSNGKPPKPDTALRIEMKFTSVEENPIYRHGIAGDPEHRGVQHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDEGNVYRQEKCWEDICYAISEAHHMIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGELLKYKSEEGVRVLMMIWDDKTSHDKLFINTEGLMQTHDEETRNFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDFHNPTIPPGAKAPRQPWHDLHCRLDGPAAYDLLINFEQRWNRATRWTEFGLRCRRITHWHDALIKIERISWILSPQVILLEDGSIKVPEDDPKVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDVHLAESLNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADNLIPMELALKIASKIRAKERFVVYIVIPMWPEGDPNSGPMQEILYWQGQTMQMMYDIVASELKSSGQPDLHPQDFLNFYCLGKQEEIPENGPTTDDPTACNSLKNRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWVKKKKHPHGQIYGYRMSLWSEHLGMLNPCFEEPETLECVRKINGIAEDNWNRFADNEFRTLQGHLLRYPVLVDDDGKINPLPGHENFPDVGGKIIGSHSAAIPDVLTT* 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3209316 3215239 - Chy2G028010.1 Chy02g00534 219982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00534 857 SUPERFAMILY Phospholipase D/nuclease 198 461 - -
Chy02g00534 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824
Chy02g00534 857 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Chy02g00534 857 Gene3D Endonuclease Chain A 529 748 - -
Chy02g00534 857 PANTHER PHOSPHOLIPASE D 5 857 IPR015679 -
Chy02g00534 857 SMART pld_4 702 729 IPR001736 GO:0003824
Chy02g00534 857 SMART pld_4 357 392 IPR001736 GO:0003824
Chy02g00534 857 SUPERFAMILY Phospholipase D/nuclease 554 787 - -
Chy02g00534 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 175 IPR035892 -
Chy02g00534 857 Pfam C2 domain 12 153 IPR000008 -
Chy02g00534 857 Gene3D C2 domain 11 183 IPR035892 -
Chy02g00534 857 PIRSF PLD_plant 1 857 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Chy02g00534 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Chy02g00534 857 Pfam Phospholipase D C terminal 778 846 IPR024632 -
Chy02g00534 857 PANTHER PHOSPHOLIPASE D DELTA 5 857 - -
Chy02g00534 857 Pfam Phospholipase D Active site motif 357 392 IPR001736 GO:0003824
Chy02g00534 857 Pfam Phospholipase D Active site motif 703 729 IPR001736 GO:0003824
Chy02g00534 857 CDD C2_plant_PLD 8 175 - -
Chy02g00534 857 Gene3D Endonuclease Chain A 226 465 - -
Chy02g00534 857 SMART C2_3c 13 151 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00534 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - csv:101217251 1771.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00534 Chy-Chr2:3209316 Chy03g01048 Chy-Chr3:13966886 0 dispersed
Chy02g00534 Chy-Chr2:3209316 Chy03g01122 Chy-Chr3:14515013 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g02000 . 313 1121 Phospholipase D Gene Family (Wang group) AT1G52570 80.8 0.0e+00 1405.2
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 75.5 0.0e+00 1335.9
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT1G52570 64.4 0.0e+00 1125.2
Chy04g00644 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.5e-269 924.1
Chy01g02000 . 318 1121 Phospholipase D Gene Family (Wang group) AT3G15730 81.4 0.0e+00 1411.0
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 75.1 0.0e+00 1340.1
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT3G15730 65.0 0.0e+00 1123.6
Chy03g01122 . 96 832 Phospholipase D Gene Family (Wang group) AT5G25370 66.9 3.0e-305 1044.3
Chy07g01611 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 2.6e-293 1004.6
Chy01g02000 . 385 1121 Phospholipase D Gene Family (Wang group) AT5G25370 63.7 5.4e-291 996.9
Chy11g02001 . 127 1096 Phospholipase D Gene Family (Wang group) AT2G42010 71.2 0.0e+00 1444.5
Chy06g01975 . 14 852 Phospholipase D Gene Family (Wang group) AT2G42010 68.7 0.0e+00 1239.2
Chy03g01048 . 4 879 Phospholipase D Gene Family (Wang group) AT2G42010 51.5 3.3e-268 921.8
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 52.0 3.5e-262 901.7
Chy11g02001 . 329 1096 Phospholipase D Gene Family (Wang group) AT4G00240 78.2 0.0e+00 1258.8
Chy06g01975 . 82 852 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1126.7
Chy03g01048 . 65 879 Phospholipase D Gene Family (Wang group) AT4G00240 53.9 2.9e-255 878.2
Chy02g00534 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.7 2.3e-252 868.6
Chy11g02001 . 267 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.5 2.4e-247 851.7
Chy06g01975 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.8 6.6e-245 843.6
Chy11g02001 . 251 1096 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1145.2
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11840 64.8 0.0e+00 1128.6
Chy02g00534 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 50.9 1.4e-247 852.8
Chy11g02001 . 257 1096 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1206.4
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11850 67.8 0.0e+00 1191.0
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.0 6.1e-254 874.0
Chy02g00534 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.6 4.3e-298 1020.4
Chy03g01048 . 7 708 Phospholipase D Gene Family (Wang group) AT4G35790 63.8 1.6e-276 948.7
Chy11g02001 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.7 9.5e-197 683.7
Chy05g01066 . 36 1111 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1339.7
Chy11g01535 . 119 1184 Phospholipase D Gene Family (Wang group) AT3G05630 61.3 0.0e+00 1315.8
Chy11g01535 . 80 1068 Phospholipase D Gene Family (Wang group) AT3G16785 73.2 0.0e+00 1450.6
Chy05g01066 . 34 989 Phospholipase D Gene Family (Wang group) AT3G16785 62.7 0.0e+00 1203.7
Chy01g02000 . 318 1121 Phospholipase D Gene Family (Wang group) AT3G15730 81.4 0.0e+00 1411.0
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 75.1 0.0e+00 1340.1
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT3G15730 65.0 0.0e+00 1123.6
Chy01g02000 . 313 1121 Phospholipase D Gene Family (Wang group) AT1G52570 80.8 0.0e+00 1405.2
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 75.5 0.0e+00 1335.9
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT1G52570 64.4 0.0e+00 1125.2
Chy11g02001 . 127 1096 Phospholipase D Gene Family (Wang group) AT2G42010 71.2 0.0e+00 1444.5
Chy06g01975 . 14 852 Phospholipase D Gene Family (Wang group) AT2G42010 68.7 0.0e+00 1239.2
Chy03g01048 . 4 879 Phospholipase D Gene Family (Wang group) AT2G42010 51.5 3.3e-268 921.8
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 52.0 3.5e-262 901.7
Chy11g02001 . 329 1096 Phospholipase D Gene Family (Wang group) AT4G00240 78.2 0.0e+00 1258.8
Chy06g01975 . 82 852 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1126.7
Chy03g01048 . 65 879 Phospholipase D Gene Family (Wang group) AT4G00240 53.9 2.9e-255 878.2
Chy02g00534 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.7 2.3e-252 868.6
Chy11g02001 . 257 1096 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1206.4
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11850 67.8 0.0e+00 1191.0
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.0 6.1e-254 874.0
Chy11g02001 . 267 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.5 2.4e-247 851.7
Chy06g01975 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.8 6.6e-245 843.6
Chy11g02001 . 251 1096 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1145.2
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11840 64.8 0.0e+00 1128.6
Chy02g00534 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 50.9 1.4e-247 852.8
Chy02g00534 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.6 4.3e-298 1020.4
Chy03g01048 . 7 708 Phospholipase D Gene Family (Wang group) AT4G35790 63.8 1.6e-276 948.7
Chy11g02001 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.7 9.5e-197 683.7
Chy04g00644 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.5e-269 924.1
Chy03g01122 . 96 832 Phospholipase D Gene Family (Wang group) AT5G25370 66.9 3.0e-305 1044.3
Chy07g01611 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 2.6e-293 1004.6
Chy01g02000 . 385 1121 Phospholipase D Gene Family (Wang group) AT5G25370 63.7 5.4e-291 996.9
Chy11g01535 . 80 1068 Phospholipase D Gene Family (Wang group) AT3G16785 73.2 0.0e+00 1450.6
Chy05g01066 . 34 989 Phospholipase D Gene Family (Wang group) AT3G16785 62.7 0.0e+00 1203.7
Chy05g01066 . 36 1111 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1339.7
Chy11g01535 . 119 1184 Phospholipase D Gene Family (Wang group) AT3G05630 61.3 0.0e+00 1315.8
Chy01g02000 . 318 1121 Phospholipase D Gene Family (Wang group) AT3G15730 81.4 0.0e+00 1411.0
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 75.1 0.0e+00 1340.1
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT3G15730 65.0 0.0e+00 1123.6
Chy01g02000 . 313 1121 Phospholipase D Gene Family (Wang group) AT1G52570 80.8 0.0e+00 1405.2
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 75.5 0.0e+00 1335.9
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT1G52570 64.4 0.0e+00 1125.2
Chy03g01122 . 96 832 Phospholipase D Gene Family (Wang group) AT5G25370 66.9 3.0e-305 1044.3
Chy07g01611 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 2.6e-293 1004.6
Chy01g02000 . 385 1121 Phospholipase D Gene Family (Wang group) AT5G25370 63.7 5.4e-291 996.9
Chy04g00644 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.5e-269 924.1
Chy11g02001 . 127 1096 Phospholipase D Gene Family (Wang group) AT2G42010 71.2 0.0e+00 1444.5
Chy06g01975 . 14 852 Phospholipase D Gene Family (Wang group) AT2G42010 68.7 0.0e+00 1239.2
Chy03g01048 . 4 879 Phospholipase D Gene Family (Wang group) AT2G42010 51.5 3.3e-268 921.8
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 52.0 3.5e-262 901.7
Chy11g02001 . 329 1096 Phospholipase D Gene Family (Wang group) AT4G00240 78.2 0.0e+00 1258.8
Chy06g01975 . 82 852 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1126.7
Chy03g01048 . 65 879 Phospholipase D Gene Family (Wang group) AT4G00240 53.9 2.9e-255 878.2
Chy02g00534 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.7 2.3e-252 868.6
Chy11g02001 . 257 1096 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1206.4
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11850 67.8 0.0e+00 1191.0
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.0 6.1e-254 874.0
Chy11g02001 . 267 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.5 2.4e-247 851.7
Chy06g01975 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.8 6.6e-245 843.6
Chy11g02001 . 251 1096 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1145.2
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11840 64.8 0.0e+00 1128.6
Chy02g00534 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 50.9 1.4e-247 852.8
Chy02g00534 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.6 4.3e-298 1020.4
Chy03g01048 . 7 708 Phospholipase D Gene Family (Wang group) AT4G35790 63.8 1.6e-276 948.7
Chy11g02001 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.7 9.5e-197 683.7
Chy11g01535 . 80 1068 Phospholipase D Gene Family (Wang group) AT3G16785 73.2 0.0e+00 1450.6
Chy05g01066 . 34 989 Phospholipase D Gene Family (Wang group) AT3G16785 62.7 0.0e+00 1203.7
Chy05g01066 . 36 1111 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1339.7
Chy11g01535 . 119 1184 Phospholipase D Gene Family (Wang group) AT3G05630 61.3 0.0e+00 1315.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001558 0 7 3 2 2 2 3 2 2 2 2 2 3 2 3 3 2 2 3 2 2 2 2 3 2 2 2 4 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00534 Chy_Chr02 FPKM 0.0 0.0 0.0 0.0 0.135028 0.0 0.0 0.0 0.0 0.094879