Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00538 ATGCCGTCCTCGGACAATATAGTACACAGCGGTTCAGATTCAGCAGGCCGTCATGAAGGCTTACTATGGTACAAGGATATTGGACAACACATGAATGGTGAATTTTCTATGGCTGTAGTTCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATTGAATCGGGTTCATTGAGCTTCCTTGACTCGGGGCCATATGGAACCTTTATTGGTGTCTATGATGGCCATGGTGGGCCTGAAGCATCAAATTACGTATATGATAATCTTTTCCAACATCTAAAAAGGTTCACCTCAGAACAGCAGTCAATGTCCACCGATGTAATAAAAAAAGCATTTCAGGCTACAGAGGAAGGGTTCATTTCTTTAGTGACTAAACAATGGCAAATGAAGCCCCAAATTGCAGCTGTTGGTTCGTGCTGCCTGGTTGGTGTGATTTGTGATGGCACCCTTTACATAGCTAACCTTGGTGATTCCCGTGCTGTGCTCGGAAGGCTCATGTGGTCAACTGAGGAGGTTATTGCCATGCAGCTATCAGCAGAGCATAATGTGAGCATAGAGTCAGTCAGAAGGGAGATGCATTCTCTGCATCCAGATGATTCACATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTATTACAGGTTTCCAGATCTATCGGTGACGTGTATCTAAAGAAGCCGGAATTCAACAGGGAACCTTTGTATTCTAAGTTTAGGCTTCGTGAACCGTTCACTCGACCATTATTGAGCTGTGAACCATCAATTTCAGTCTATGAGCTTCAACCACACGATCAGTTTATCATATTTGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAGCAAGCTGTAGATCTGATTCGAAGTCACCCACATAATGGAAGTGCCAAGAGGCTGGTAAAAGTTGCTATGCTAGAAGCAGCTAAAAAACGAGAAATGCGATATTCAGACTTGAAGGATATTGATCGTGGAATACGCCGCCATTTTCATGATGACATCACTGTCATAGTTGTATTTCTCGACTCTAATCTTGTAAGCAGAGCGAGCTCGGTCCGTGGTCCAACAACGTCTTTGAGAGGGTGTGGTGTTATCTTACCTACAAAATCTCTTGCGCGTTGCACCACACCTACAGAACTTAACACAATCTCATGA 1158 43.96 MPSSDNIVHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSFLDSGPYGTFIGVYDGHGGPEASNYVYDNLFQHLKRFTSEQQSMSTDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICDGTLYIANLGDSRAVLGRLMWSTEEVIAMQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLLQVSRSIGDVYLKKPEFNREPLYSKFRLREPFTRPLLSCEPSISVYELQPHDQFIIFASDGLWEHISNQQAVDLIRSHPHNGSAKRLVKVAMLEAAKKREMRYSDLKDIDRGIRRHFHDDITVIVVFLDSNLVSRASSVRGPTTSLRGCGVILPTKSLARCTTPTELNTIS* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3239014 3240857 - Chy2G028050.1 Chy02g00538 219986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00538 385 SMART PP2C_4 28 340 IPR001932 -
Chy02g00538 385 PANTHER ALPHABET, ISOFORM E-RELATED 2 373 - -
Chy02g00538 385 CDD PP2Cc 35 342 IPR001932 -
Chy02g00538 385 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 2 373 - -
Chy02g00538 385 ProSiteProfiles PPM-type phosphatase domain profile. 34 342 IPR001932 -
Chy02g00538 385 Pfam Protein phosphatase 2C 67 312 IPR001932 -
Chy02g00538 385 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169
Chy02g00538 385 Gene3D - 24 352 IPR036457 -
Chy02g00538 385 SUPERFAMILY PP2C-like 43 343 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00538 Chy-Chr2:3239014 Chy10g00608 Chy-Chr10:12662172 8.08E-178 dispersed
Chy08g00754 Chy-Chr8:15251821 Chy02g00538 Chy-Chr2:3239014 2.80E-38 dispersed
Chy11g01233 Chy-Chr11:18459664 Chy02g00538 Chy-Chr2:3239014 1.39E-38 dispersed
Chy11g00244 Chy-Chr11:2291313 Chy02g00538 Chy-Chr2:3239014 0 wgd
Chy02g00538 Chy-Chr2:3239014 Chy06g02254 Chy-Chr6:26572802 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00538 K01102 - csv:101219696 763.451