Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00555 ATGGCGTCTCCCAATGTCGATGCTGTGTACCTGAAGGAAATCGAGAAGGCCCGTCGAGACCTCCGTGCTTTAATCTTCAAGGAGAAATGCGCTCCCATTATGCTCCGTTTAGCGTGGCATGATGCTGGTACCTATGACGCTAAAACGAAAACCGGAGGTCCCAATGGCTCCATCAGGTTCATGAATGAATTGAACCATACTGCAAACAAGGGACTCAAAATCGCAGTTGATTTCTGTGAAACTGTGAAGACCAGACATCCAAAAATCACATATGCAGATCTGTACCAGCTTGCTGGAGTTGTTGCTGTGGAGATTACTGGCGGGCCAACCATTGACTTTGTCCCCGGAAGAAAGGACGCAAATGCAGCTGTAGAAGAAGGCCGCCTTCCAGATGGCCACAAAGGTGCTTCCCATTTAAGAGATGTATTTTACAGGATGGGACTAACTGACAAGGATATTGTGGCATTATCTGGAGGACACACATTGGGAAGAGCTCACAAGGACAGATCAGATTTTGAAGGCCCATGGACAAAGGACTTTCTGAAGTTTGATAACTCCTACTTTGTGGAATTGCTGAAAAATAACTCTCGATCTGGGGAACAACTGTTGAAGCTTCCTACAGACAAGGCCTTGGTCACAGATTCTCGATTTTCCCAATATGTGAGGGAATACGCAAAGGATGAAGACAAGTTTTTCAAGGATTATGCAGCATCTCACAAGAAACTGTCTGAGCTTGGCTTCACTAAACCTTCCACAGTTCTCAATGGCAAAGGCTGTGCTTGGAAAAACGGAATTGTGGTAGCTGTGATCGTAGCAGTTGTGGGGATACTGAGTTACAATAGAGGCATGTTGCCTAAGGGGGGGAATGCCTTTCCACTAAATCTATTCTGA 891 45.79 MASPNVDAVYLKEIEKARRDLRALIFKEKCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRFMNELNHTANKGLKIAVDFCETVKTRHPKITYADLYQLAGVVAVEITGGPTIDFVPGRKDANAAVEEGRLPDGHKGASHLRDVFYRMGLTDKDIVALSGGHTLGRAHKDRSDFEGPWTKDFLKFDNSYFVELLKNNSRSGEQLLKLPTDKALVTDSRFSQYVREYAKDEDKFFKDYAASHKKLSELGFTKPSTVLNGKGCAWKNGIVVAVIVAVVGILSYNRGMLPKGGNAFPLNLF* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3336023 3339280 + Chy2G028220.1 Chy02g00555 220003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00555 296 CDD ascorbate_peroxidase 3 250 - -
Chy02g00555 296 Pfam Peroxidase 18 227 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 3 279 IPR044831 GO:0004601|GO:0034599
Chy02g00555 296 ProSitePatterns Peroxidases proximal heme-ligand signature. 152 162 IPR019793 -
Chy02g00555 296 Gene3D - 17 246 - -
Chy02g00555 296 Gene3D Peroxidase, domain 2 130 239 - -
Chy02g00555 296 ProSitePatterns Peroxidases active site signature. 31 42 IPR019794 GO:0004601
Chy02g00555 296 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Haem peroxidase superfamily signature 152 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Haem peroxidase superfamily signature 31 45 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Plant ascorbate peroxidase signature 49 59 IPR002207 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Plant ascorbate peroxidase signature 146 167 IPR002207 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Plant ascorbate peroxidase signature 168 192 IPR002207 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Plant ascorbate peroxidase signature 128 145 IPR002207 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Plant ascorbate peroxidase signature 63 87 IPR002207 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Plant ascorbate peroxidase signature 88 106 IPR002207 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Plant ascorbate peroxidase signature 107 119 IPR002207 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Plant ascorbate peroxidase signature 10 30 IPR002207 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Plant ascorbate peroxidase signature 31 46 IPR002207 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PRINTS Plant ascorbate peroxidase signature 223 247 IPR002207 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 PANTHER L-ASCORBATE PEROXIDASE 5, PEROXISOMAL 3 279 - -
Chy02g00555 296 ProSiteProfiles Plant heme peroxidase family profile. 89 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy02g00555 296 SUPERFAMILY Heme-dependent peroxidases 5 249 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00555 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101220337 576.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00685 Chy-Chr1:4981703 Chy02g00555 Chy-Chr2:3336023 7.63E-138 dispersed
Chy02g00555 Chy-Chr2:3336023 Chy11g01292 Chy-Chr11:19096808 3.64E-104 dispersed
Chy02g00555 Chy-Chr2:3336023 Chy03g00215 Chy-Chr3:2013946 1.33E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1146 . . . . . . . . . . Cma03g00672 . Car03g00618 . . . . . . . . . . . . . . . . . . . . Cone6ag1693 Cone9ag1617 Lsi01g00584 . . . . Blo06g00285 . . . . . . . Cmo03g00697 . . . . . . . . . . . . . . . . . . . . . . . Chy02g00555 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00555 Chy_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.788753 0.0 0.0 0.0 0.0