Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00560 ATGAAACAAGCCAATACCATCATTCTTCAATTGAGGAAGTGGAGTCATCTCCAACCTAATCCCACTCCCTCTTTTTTCTCCGGCAGGTGTTGCAAAACGACATGTCGTCCTACAAACCAGCAACCATCGGAATCAAATCTCACTATAAAAAGAAATTTCAACGTTCTTCTTCGCCATCAGAATTTACCGCCTGTTTCCGCCGCCGTTCTTCTCCCCCCGCAGTCTCCGACTTTAAAAACCGCCCATAGATTTCGAACCTCCGGAATTCGCCCGCCAATCATGGGCTCCCTCGATAGCAGTTCCGATTCCGGAATCGTCACTGTCGACGTTAAAACCGCGGATAATCTGCTCCATTCCGGCTACGCTTTTCTCGACGTCAGGACTGTTGAGGAGTTTAAGGAAGGGCATGTGGCGACGGAGAGGATTATTAATATTCCGTATCTGTTAAATTCTCCTAATGGTAGGGTGAAAAATGCTCAGTTTCTGGCGGAAGTATCGGCCGTATTTAAGAAAGACGACCGCTTCGTCGTGGGTTGCCGAAGTGGTGTAAGATCATTGCTCGCCATCGAAGAACTCCAGAATGATGGTTACAGGCACTTGAAAGATTTAGGTGGAGGGCATCTAGCTTGGTTGGAGAATGCATTACCCGTAGCTAACCCATATGAAAAGCTAACAAATGATCCAAAAGTAATCGAGGATCGTAAAATTGATGAACTAGGACCAACCTATCATACTGCGAAGCACCAGATTGGATCCCCTTTGGCTCAGCCAACAAGCAAAGGTTTGCAGGGAAGATCGAAGTGTTGCGTTAGCGCCAGATTCATCTTTCGTAGTTCTACCTCTTCAACGATGGTGCTCGAGGCGACTATGATCTGTATTGACAATTCCGAATGGATGCGTAATGGAGATTACGCTCCTTCAAGATTTCAAGCTCAAGCAGATGCCATCAATCTTATTTGTGGAGCTAAGACGCAGTCTAATCCAGAGAATACGGTTGGGGTTCTCACAATGGCGGGAAAAGGTGTTCGTGTGCTGGTTACGCCCACCACTGACCTGGGCAAGATACTGGCATGCATGCACGGATTGGAGATAGGGGGTGAGATAAACCTAGCAGCTGGCATCCAGGTGGCTCAGTTGGCTCTTAAGCATCGTCAGAACAAAAAGCAGCAACAAAGGATTATAGTTTTTGTTGGCAGTCCTGTCAAACATGAGAAAAAGTTACTGGAGATGATAGGAAGGAAGTTGAAGAAGAACAATGTGGCCCTTGACATTGTTGGTTTTGGCGAAGAAGATGATGGCAAACCTGAGAAACTGGAAAGTCTTCTGGCAGCTGTGAATAGTAATGACACCAGTCACATTGTTCATGTTCCTGCTGGTCCAAATGTGCTCTCTGATGTACTCATCAGTACTCCTATCTTTACTGGAGATGGCGAAGGTGGAAGTGGTTTTGCAGCAGCTGCAGCAGCAGCTGCTGCTGGTGGAGTATCTGGTTTCGATTTTGGGGTCGATCCCAACTTAGATCCCGAACTTGCCCTTGCTCTTAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAAGAGGCAGCTGCGAAAAAGGCTGCAGAGGAGAATACAAAGCAAGAAAAAGGAGCTGAGCAGCCATCTGGTTCACAGGATGCAACTATGACCGAGCGCCCTGGCCTTGCGACTTCTGATGCTGAAAACAAGGCTGCTGATTTAATGGATGATGAGAATACACTGCTACAACAAGCCCTTGCTATGTCAATGGATAATCCTTCTGGTACCAGCGACATACGAGATATTGACATGTCAGAAGCAGCATCAGACGATCCTGAGTTGGCACTTGCTCTTCAGCTGTCTGTGCAGGAAGGCTCCAGTGATTCGTCAAGCCAGACAGATATGAGTAAATTGTTGGCTGATCAGTCTTTTGTGTCTTCTATTCTTGCTTCGCTTCCCGGCGTAGATCCAAATGATCCCTCTGTAAAAGATTTGCTTGCTTCCATGCAAAGCCAAGCAGAGGATAAGAAAGAGGATAAGAAAGACGAAGATAAATCATCAAAGGAAGACGAAAAATGA 2073 46.6 MKQANTIILQLRKWSHLQPNPTPSFFSGRCCKTTCRPTNQQPSESNLTIKRNFNVLLRHQNLPPVSAAVLLPPQSPTLKTAHRFRTSGIRPPIMGSLDSSSDSGIVTVDVKTADNLLHSGYAFLDVRTVEEFKEGHVATERIINIPYLLNSPNGRVKNAQFLAEVSAVFKKDDRFVVGCRSGVRSLLAIEELQNDGYRHLKDLGGGHLAWLENALPVANPYEKLTNDPKVIEDRKIDELGPTYHTAKHQIGSPLAQPTSKGLQGRSKCCVSARFIFRSSTSSTMVLEATMICIDNSEWMRNGDYAPSRFQAQADAINLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHGLEIGGEINLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKLLEMIGRKLKKNNVALDIVGFGEEDDGKPEKLESLLAAVNSNDTSHIVHVPAGPNVLSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEENTKQEKGAEQPSGSQDATMTERPGLATSDAENKAADLMDDENTLLQQALAMSMDNPSGTSDIRDIDMSEAASDDPELALALQLSVQEGSSDSSSQTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQAEDKKEDKKDEDKSSKEDEK* 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3360365 3368210 - Chy2G028270.1 Chy02g00560 220008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00560 690 Pfam Rhodanese-like domain 114 212 IPR001763 -
Chy02g00560 690 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 105 217 IPR036873 -
Chy02g00560 690 Gene3D von Willebrand factor, type A domain 286 469 IPR036465 -
Chy02g00560 690 Gene3D - 503 589 - -
Chy02g00560 690 ProSiteProfiles VWFA domain profile. 288 472 IPR002035 -
Chy02g00560 690 Pfam Ubiquitin interaction motif 507 520 IPR003903 -
Chy02g00560 690 Pfam Ubiquitin interaction motif 575 588 IPR003903 -
Chy02g00560 690 Pfam Ubiquitin interaction motif 607 622 IPR003903 -
Chy02g00560 690 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 284 690 - -
Chy02g00560 690 MobiDBLite consensus disorder prediction 523 541 - -
Chy02g00560 690 MobiDBLite consensus disorder prediction 668 690 - -
Chy02g00560 690 Gene3D - 96 218 IPR036873 -
Chy02g00560 690 SUPERFAMILY vWA-like 287 458 IPR036465 -
Chy02g00560 690 MobiDBLite consensus disorder prediction 523 561 - -
Chy02g00560 690 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 505 524 IPR003903 -
Chy02g00560 690 SMART VWA_4 285 458 IPR002035 -
Chy02g00560 690 SMART rhod_4 107 216 IPR001763 -
Chy02g00560 690 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 284 690 - -
Chy02g00560 690 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 607 626 IPR003903 -
Chy02g00560 690 ProSiteProfiles Rhodanese domain profile. 117 219 IPR001763 -
Chy02g00560 690 CDD RHOD 120 210 - -
Chy02g00560 690 MobiDBLite consensus disorder prediction 588 608 - -
Chy02g00560 690 MobiDBLite consensus disorder prediction 542 557 - -
Chy02g00560 690 CDD VWA_26S_proteasome_subunit 284 471 - -
Chy02g00560 690 SMART uim 575 594 IPR003903 -
Chy02g00560 690 SMART uim 607 626 IPR003903 -
Chy02g00560 690 SMART uim 505 524 IPR003903 -
Chy02g00560 690 MobiDBLite consensus disorder prediction 648 690 - -
Chy02g00560 690 Pfam von Willebrand factor type A domain 289 397 IPR002035 -
Chy02g00560 690 Coils Coil 515 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00560 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 - csv:101221273 702.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00530 Chy-Chr2:3195076 Chy02g00560 Chy-Chr2:3360365 4.03E-27 transposed
Chy02g02624 Chy-Chr2:29365893 Chy02g00560 Chy-Chr2:3360365 8.99E-06 transposed
Chy04g02254 Chy-Chr4:27215516 Chy02g00560 Chy-Chr2:3360365 3.96E-06 transposed
Chy11g00268 Chy-Chr11:2493014 Chy02g00560 Chy-Chr2:3360365 1.14E-08 wgd
Chy02g00560 Chy-Chr2:3360365 Chy06g02238 Chy-Chr6:26462538 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1132 . . . . Bpe15g00476 Bpe13g00410 . . . . . Cma07g00417 Car03g00623 Car07g00367 Sed14g1201 Cpe19g00866 Cpe10g00673 Bhi03g00846 Tan03g2094 Cmetu04g2423 . Hepe04g1603 . . . . . . . . . Cone8ag0856 . Cone6ag1691 Cone9ag1613 Lsi01g00589 . . Cme08g00943 . . . . . . Bma03g00956 Bma06g00092 . Cmo03g00701 Cmo07g00415 . . . . . . . . . . . . . . . . . . . . Lsi07g01096 Csa06g03341 Chy02g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00560 Chy_Chr02 FPKM 17.974134 19.819464 1.557906 1.942737 7.530276 6.105601 7.409909 0.497289 0.801862 0.528016