Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00561 ATGGAGGAACCTTCTACATCGCCGTTGCCGGCGGCGTTTCTTGATTTTCTTAAGGAGAATGGTCTGGACCCTTCCCTTTACTCCGCTACTGATTCCACTCCTCGTTATGTCAGGTTGAAGCCTGGTTATGAAGCCGATGTGGAGGAGATAGAGGACGAGATCAAGTGCAAGCTCGAGAAAGTCAGTTGGCTTCCTGGATTCTATTCGCTTCCGCCTGATGTGCAAATTGCTGGTTCTCATGCTTACAAAAAAGGAAAGATATATGGGATAGATGCAGCTTCCGGTGCTGCTGTAACTGCCTTGGACATTTTACCGGGAAACCATGTTCTCGATCTTTGTGCAGCTCCAGGGGCCAAACTTTGCATGATCGTAGACCTTCTTGATGGTTTGGGTTCTGTAACCGGAGTAGATGTTTCACAGCATCGTTTAGCTGCTTGTAGAACAATGCTGCAAAAATATGCTCTTGGTGATATTTGCCGACTTTTTGTTGCTGATGGAGCAACGTTTTCTTTCATTCCCGTGAATGTTACTTCAGAGTCTAAATTTGGTGAATCGACCTTAGAAGATAGCGTTGACAGATTGAAGGAGTGGACCTCCAGAAAATCTTGGAAGGAAAGGAAAAAAACAGCCAAAGCAAAACAAAATGTTTCTGCGGAGTTAGTTCAGAGCCGTCAGAATCCAGAACTCATCTTTTATGGGCTGAAATCTGGCGTGGTTGGGTTCACTAAGAGTGAAATTTACCGAAGCCCTCCAGAAAATGAGTTGTTGAGCTATGGGTATGATAGGGTCCTTGTGGATGCCGAGTGCACTCATGATGGCTCTATAAAGCATATCCAGAAATTTGAAAGTTGGGGTTGGACATCTTTTCAGCGCAGAGTATTGGACGCTGAGAGAACAGATAATTTGACTGTACTTCAGTTAAGACTCCTTGCCAATGGTTTTAGGTTGCTCAAATATGGGGGGATACTTGTCTACAGCACTTGCAGTCTGACCGTAGCACAGAACGAGGATGTGGTGGAACAGTTTCTCAAGGATAATGCTTCCGCAGAGTTGCAGGAGATAGAAGTTGCCAGAAATTGGCCATGTAAGAGCGGAGGAATACCAAAAACCTTACGCTTTGATCCTTTGACATCACAGACAAGTGGGCTTTTTGTAGCGAAATTCTTGAAGATAAGCTGA 1179 44.78 MEEPSTSPLPAAFLDFLKENGLDPSLYSATDSTPRYVRLKPGYEADVEEIEDEIKCKLEKVSWLPGFYSLPPDVQIAGSHAYKKGKIYGIDAASGAAVTALDILPGNHVLDLCAAPGAKLCMIVDLLDGLGSVTGVDVSQHRLAACRTMLQKYALGDICRLFVADGATFSFIPVNVTSESKFGESTLEDSVDRLKEWTSRKSWKERKKTAKAKQNVSAELVQSRQNPELIFYGLKSGVVGFTKSEIYRSPPENELLSYGYDRVLVDAECTHDGSIKHIQKFESWGWTSFQRRVLDAERTDNLTVLQLRLLANGFRLLKYGGILVYSTCSLTVAQNEDVVEQFLKDNASAELQEIEVARNWPCKSGGIPKTLRFDPLTSQTSGLFVAKFLKIS* 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3370165 3374203 + Chy2G028280.1 Chy02g00561 220009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00561 392 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 135 152 IPR023269 -
Chy02g00561 392 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 281 300 IPR023269 -
Chy02g00561 392 PRINTS RNA (C5-cytosine) methyltransferase subfamily 9 signature 9 27 IPR023269 -
Chy02g00561 392 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 22 391 IPR001678 GO:0008168
Chy02g00561 392 Pfam 16S rRNA methyltransferase RsmB/F 258 388 IPR001678 GO:0008168
Chy02g00561 392 Pfam 16S rRNA methyltransferase RsmB/F 99 156 IPR001678 GO:0008168
Chy02g00561 392 Gene3D Vaccinia Virus protein VP39 8 390 IPR029063 -
Chy02g00561 392 PRINTS RNA (C5-cytosine) methyltransferase signature 373 390 IPR023267 GO:0001510
Chy02g00561 392 PRINTS RNA (C5-cytosine) methyltransferase signature 81 95 IPR023267 GO:0001510
Chy02g00561 392 PRINTS RNA (C5-cytosine) methyltransferase signature 320 336 IPR023267 GO:0001510
Chy02g00561 392 PRINTS RNA (C5-cytosine) methyltransferase signature 110 120 IPR023267 GO:0001510
Chy02g00561 392 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 4 390 - -
Chy02g00561 392 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 4 390 IPR023267 GO:0001510
Chy02g00561 392 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 18 390 IPR029063 -
Chy02g00561 392 CDD AdoMet_MTases 109 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00561 - - - csv:101221513 765.763
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00561 Chy-Chr2:3370165 Chy07g00265 Chy-Chr7:2096835 6.99E-08 dispersed
Chy02g00561 Chy-Chr2:3370165 Chy02g00733 Chy-Chr2:4480167 1.11E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1126 . . . Bda10g00189 . . . . . . Cma03g00678 . Car03g00626 . Sed05g0671 . . Bhi03g00848 Tan03g2092 Cmetu04g1543 . Hepe04g1601 . . . . . . . . . . . Cone6ag1689 Cone9ag1611 Lsi01g00592 . . Cme08g00941 . Blo06g00294 . . Bpe10g00161 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03339 Chy02g00561 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014670 1 1 1 1 1 1 0 0 0 1 0 0 1 1 1 0 0 2 1 1 1 1 1 1 0 0 0 0 0 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00561 Chy_Chr02 FPKM 0.17987 0.522549 1.702904 1.558782 31.252102 35.452339 28.318014 0.0 0.0 0.0