Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00565 ATGGGGACGCTTTGCTATTTGAGACATTCTTCTCCCTTATTCTCCATCTTGATTGTGTTTCTTCTTCTCAGAGAGGTTTCCGGTGCTACATTCACGTTCGTTAACAAGTGTGATTACACCGTCTGGCCGGGAATTCTCGCCAGTTCCGGCAGTCCGAAACTCGAAACCACCGGTTTCGAGCTCAAAGCGGGCAATTCTCGCTCTTTGCAAGCTCCAACCGGCTGGTCCGGTCGGTTCTGGGGCCGAACCAATTGCAATTTTGACGACTCCGGGCGTGGCAGCTGCAACACCGGCGACTGCGGCTCTGGAGAGATAGAGTGCAACGGCGCCGGTGCTACGCCTCCGGCAACGTTAGCCGAATTCACACTCGGCTCTGGTTCGCAGGATTTCTACGACGTTAGCCTAGTCGATGGCTACAATCTGCCGATGATCGTGGAGGGAACCGGGGGGTCCGGCACGTGTGCGTCAACCGGCTGCATTACGGACCTGAACCAACTTTGCCCGGCTGAGCTGAAGGCGGAGGCTGGCGGCGCGTGTAAAAGTGCTTGTGAAGCATTTGAGACGCCGGAGTACTGCTGCAGCGGGGAGTACAACTCGCCGGCGACTTGCAGGCCGTCAATGTACTCACAAATGTTTAAATCGGCGTGCCCTAAATCATACAGTTACGCGTATGATGACGCCACCAGCACGTTCACTTGCAATGGAGCTGACTACACCATCACATTTTGCCCTTCTTCACCAAGTCGAAAGTCTTCAAGTGATTCGTCACAAACAATACCAAAATCAGATACAGATATTGAGTCTGAACCAGGGTCAGAATCAGAATCGGGAACAATACAAGGAGCGGCTTTGAGTAGTTCTTGGCTGGCAAATATGGCGATTGGAGGAGACTCATCCAGGGCCACAAAACCAAGCTTGGCATTTCAATATACTTCAATTTTGATATTCAATTTGGTTCTATCTTTGGTTCTTCTCTGGTAG 981 51.68 MGTLCYLRHSSPLFSILIVFLLLREVSGATFTFVNKCDYTVWPGILASSGSPKLETTGFELKAGNSRSLQAPTGWSGRFWGRTNCNFDDSGRGSCNTGDCGSGEIECNGAGATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMIVEGTGGSGTCASTGCITDLNQLCPAELKAEAGGACKSACEAFETPEYCCSGEYNSPATCRPSMYSQMFKSACPKSYSYAYDDATSTFTCNGADYTITFCPSSPSRKSSSDSSQTIPKSDTDIESEPGSESESGTIQGAALSSSWLANMAIGGDSSRATKPSLAFQYTSILIFNLVLSLVLLW* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3402686 3403985 - Chy2G028320.1 Chy02g00565 220013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00565 326 MobiDBLite consensus disorder prediction 245 278 - -
Chy02g00565 326 PANTHER OS03G0233200 PROTEIN 19 264 IPR001938 -
Chy02g00565 326 SMART tha2 31 244 IPR001938 -
Chy02g00565 326 Gene3D Thaumatin 29 244 IPR037176 -
Chy02g00565 326 ProSiteProfiles Thaumatin family profile. 28 244 IPR001938 -
Chy02g00565 326 PANTHER THAUMATIN-LIKE PROTEIN 1 19 264 - -
Chy02g00565 326 SUPERFAMILY Osmotin, thaumatin-like protein 29 245 IPR037176 -
Chy02g00565 326 PRINTS Pathogenesis-related protein signature 129 145 IPR001938 -
Chy02g00565 326 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Chy02g00565 326 PRINTS Pathogenesis-related protein signature 78 89 IPR001938 -
Chy02g00565 326 PRINTS Pathogenesis-related protein signature 91 120 IPR001938 -
Chy02g00565 326 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Chy02g00565 326 ProSitePatterns Thaumatin family signature. 91 107 IPR017949 -
Chy02g00565 326 Pfam Thaumatin family 35 244 IPR001938 -
Chy02g00565 326 CDD TLP-PA 30 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00565 - - - csv:101222295 590.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00565 Chy-Chr2:3402686 Chy06g02236 Chy-Chr6:26453781 2.95E-139 dispersed
Chy03g01486 Chy-Chr3:17304059 Chy02g00565 Chy-Chr2:3402686 2.47E-88 dispersed
Chy03g01487 Chy-Chr3:17304239 Chy02g00565 Chy-Chr2:3402686 9.46E-89 dispersed
Chy12g01400 Chy-Chr12:18141359 Chy02g00565 Chy-Chr2:3402686 3.63E-86 dispersed
Chy12g01401 Chy-Chr12:18141431 Chy02g00565 Chy-Chr2:3402686 3.23E-88 dispersed
Chy01g01883 Chy-Chr1:24185335 Chy02g00565 Chy-Chr2:3402686 8.96E-89 transposed
Chy12g00178 Chy-Chr12:2157764 Chy02g00565 Chy-Chr2:3402686 9.77E-62 transposed
Chy11g00272 Chy-Chr11:2525833 Chy02g00565 Chy-Chr2:3402686 9.13E-121 wgd
Chy02g00565 Chy-Chr2:3402686 Chy03g01376 Chy-Chr3:16597191 4.08E-130 wgd
Chy02g00565 Chy-Chr2:3402686 Chy06g02234 Chy-Chr6:26443876 1.32E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00565 Chy_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.237315 0.0 0.0 0.338699 0.129572