Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00573 ATGGAACAGTGGAAGACCGGAGATTTCTCTCAATCTGTTGTACCAGCTGAGTTAGTTCCTTCCTCGTCTCTTCAGCCTCAGCCTCAGCCTCAGCCTCAACCTCTTGCTGTGTCCTCCACTCGTCACCTTAGCAACCAGCTTACTGAATCCAGGTTAAGAACAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAAGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTCGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAGCTCTATCTGAAGAATCACGTGAGCTAACCCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGACATTGAAAATCTAAATGCTCAGTATCAGCAAAGACTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCGGTTGTCATGGGGCCCCCATATTCCTACCCAGTTCCTGTTCCTGTTCCCCCTGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTCGGAAATCAGAATCCCGGCGCTATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATCGATCAGCCATCCGCCCAATATGCTTCCAACTCACATATATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGTGGAAAGGTGTGATGAATCTACCGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCAACACTGCAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAATCGCAAAGGAAAGAAAAAAGTGCTACAGATTGTAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCTTCTAACAGCGTTGGCGACATCCCAAAACAGAACAACTGA 1023 44.87 MEQWKTGDFSQSVVPAELVPSSSLQPQPQPQPQPLAVSSTRHLSNQLTESRLRTDAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIDQPSAQYASNSHISSKQDSRSKSSDQHRRSNVERCDESTDVATDLELKMPGSSTLQDASSGSKKGKQSQRKEKSATDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3449042 3451636 + Chy2G028400.1 Chy02g00573 220021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00573 340 MobiDBLite consensus disorder prediction 236 340 - -
Chy02g00573 340 Gene3D - 63 166 IPR036638 GO:0046983
Chy02g00573 340 SMART finulus 70 120 IPR011598 GO:0046983
Chy02g00573 340 Pfam Helix-loop-helix DNA-binding domain 65 114 IPR011598 GO:0046983
Chy02g00573 340 CDD bHLH_AtILR3_like 69 143 - -
Chy02g00573 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 134 IPR036638 GO:0046983
Chy02g00573 340 MobiDBLite consensus disorder prediction 252 277 - -
Chy02g00573 340 MobiDBLite consensus disorder prediction 34 51 - -
Chy02g00573 340 MobiDBLite consensus disorder prediction 283 297 - -
Chy02g00573 340 MobiDBLite consensus disorder prediction 236 251 - -
Chy02g00573 340 PANTHER TRANSCRIPTION FACTOR BHLH121 38 339 IPR044579 GO:0003700|GO:0055072
Chy02g00573 340 Coils Coil 104 159 - -
Chy02g00573 340 MobiDBLite consensus disorder prediction 1 24 - -
Chy02g00573 340 MobiDBLite consensus disorder prediction 1 51 - -
Chy02g00573 340 PANTHER TRANSCRIPTION FACTOR BHLH11 38 339 - -
Chy02g00573 340 MobiDBLite consensus disorder prediction 312 340 - -
Chy02g00573 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 114 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00573 Chy-Chr2:3449042 Chy04g01015 Chy-Chr4:14961646 8.34E-24 dispersed
Chy02g02506 Chy-Chr2:28496600 Chy02g00573 Chy-Chr2:3449042 4.92E-20 transposed
Chy06g00483 Chy-Chr6:3237018 Chy02g00573 Chy-Chr2:3449042 1.04E-13 transposed
Chy11g00586 Chy-Chr11:6690012 Chy02g00573 Chy-Chr2:3449042 2.40E-19 transposed
Chy12g01019 Chy-Chr12:15419503 Chy02g00573 Chy-Chr2:3449042 2.13E-14 transposed
Chy11g00295 Chy-Chr11:2718166 Chy02g00573 Chy-Chr2:3449042 7.14E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17454 PF00010 HLH 6.60E-09 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00573 - - csv:101222613 565.074