Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy02g00597 | ATGGACATGGAGTCTGCTTTCAAATCCACCCCCAAACTTCTTTTCGATGACTTTTGGTCCTCCAATCTTCAAAACGCTTCATCCCCATCTTCCGACCACATTTTCGTAGATCAATTCCTCAACTTTTCAGATGAAGAACAGCAAGAAGATGAAGAAAAAAACAACCATTCCTCCGTTTCTCCTCCCCTTCAACTTCAACAAGTACATCACGACACCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCTGAAGATGACTTTTGGTCTATTACTTCAACAGATTTTGAAGACCTTGACTGGCTCTCTCATCTCGTTGCCGATTCCACCCAAGAAGAATACTCTGCCCCAACTCCCTCTGTTTTCTTGACACACAAACCTAGAAATCCCCTTCCCAATTTTCAATCTTATCTCAACACCCCATTTCCTTCAAAACCCAGAACCAAGCGACCAAAAATCTCCGCCCGAGTCTGGTCTTTAACGAATTTAATTCCATCCCCGCTGCCGGCGAAGAAATCAAAGAAGAATCATACAGACGAGGGATCCGGGCGGGTCCAGGCGGGGCGCCGGTGCAGTCATTGTGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGCCCACTTGGAGCAAAGAGTCTATGTAATGCATGCGGTGTCCGGTTCAAATCCGGACGGCTTTTTCCCGAATATAGACCGGCTAGTAGCCCGACGTTTTCGAACGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAAGAGAAAAACCCCACTCCGGCGTGGACTTAGTGTAA | 807 | 47.83 | MDMESAFKSTPKLLFDDFWSSNLQNASSPSSDHIFVDQFLNFSDEEQQEDEEKNNHSSVSPPLQLQQVHHDTDQNSNHSSTNSSEDDFWSITSTDFEDLDWLSHLVADSTQEEYSAPTPSVFLTHKPRNPLPNFQSYLNTPFPSKPRTKRPKISARVWSLTNLIPSPLPAKKSKKNHTDEGSGRVQAGRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPASSPTFSNELHSNHHRKVLEMRRKKEREKPHSGVDLV* | 269 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3627641 | 3628447 | - | Chy2G028640.1 | Chy02g00597 | 220045 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy02g00597 | 268 | PANTHER | GATA TRANSCRIPTION FACTOR | 169 | 260 | - | - | |
Chy02g00597 | 268 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 188 | 248 | - | - | |
Chy02g00597 | 268 | PIRSF | Txn_fac_GATA_plant | 4 | 267 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Chy02g00597 | 268 | ProSitePatterns | GATA-type zinc finger domain. | 191 | 216 | IPR000679 | GO:0006355|GO:0043565 | |
Chy02g00597 | 268 | MobiDBLite | consensus disorder prediction | 166 | 186 | - | - | |
Chy02g00597 | 268 | MobiDBLite | consensus disorder prediction | 172 | 186 | - | - | |
Chy02g00597 | 268 | PANTHER | GATA TRANSCRIPTION FACTOR | 26 | 161 | - | - | |
Chy02g00597 | 268 | Gene3D | - | 182 | 262 | IPR013088 | GO:0006355|GO:0008270 | |
Chy02g00597 | 268 | MobiDBLite | consensus disorder prediction | 68 | 87 | - | - | |
Chy02g00597 | 268 | Pfam | GATA zinc finger | 191 | 224 | IPR000679 | GO:0006355|GO:0043565 | |
Chy02g00597 | 268 | PANTHER | GATA TRANSCRIPTION FACTOR | 169 | 260 | - | - | |
Chy02g00597 | 268 | PANTHER | GATA TRANSCRIPTION FACTOR | 26 | 161 | - | - | |
Chy02g00597 | 268 | ProSiteProfiles | GATA-type zinc finger domain profile. | 185 | 221 | IPR000679 | GO:0006355|GO:0043565 | |
Chy02g00597 | 268 | SMART | GATA_3 | 185 | 235 | IPR000679 | GO:0006355|GO:0043565 | |
Chy02g00597 | 268 | CDD | ZnF_GATA | 190 | 239 | IPR000679 | GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy02g00597 | Chy07g01272 | CCT | |
Chy02g00597 | Chy07g01272 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00597 | Chy-Chr2:3627641 | Chy04g00936 | Chy-Chr4:13453297 | 1.26E-38 | dispersed | |
Chy07g01272 | Chy-Chr7:17445238 | Chy02g00597 | Chy-Chr2:3627641 | 3.49E-48 | transposed | |
Chy02g00597 | Chy-Chr2:3627641 | Chy07g01246 | Chy-Chr7:17188135 | 1.23E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17459 | PF00320 | GATA | 1.10E-16 | CL0167 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy02g00597 | - | K21630 | csv:105435937 | 535.413 |