Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00597 ATGGACATGGAGTCTGCTTTCAAATCCACCCCCAAACTTCTTTTCGATGACTTTTGGTCCTCCAATCTTCAAAACGCTTCATCCCCATCTTCCGACCACATTTTCGTAGATCAATTCCTCAACTTTTCAGATGAAGAACAGCAAGAAGATGAAGAAAAAAACAACCATTCCTCCGTTTCTCCTCCCCTTCAACTTCAACAAGTACATCACGACACCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCTGAAGATGACTTTTGGTCTATTACTTCAACAGATTTTGAAGACCTTGACTGGCTCTCTCATCTCGTTGCCGATTCCACCCAAGAAGAATACTCTGCCCCAACTCCCTCTGTTTTCTTGACACACAAACCTAGAAATCCCCTTCCCAATTTTCAATCTTATCTCAACACCCCATTTCCTTCAAAACCCAGAACCAAGCGACCAAAAATCTCCGCCCGAGTCTGGTCTTTAACGAATTTAATTCCATCCCCGCTGCCGGCGAAGAAATCAAAGAAGAATCATACAGACGAGGGATCCGGGCGGGTCCAGGCGGGGCGCCGGTGCAGTCATTGTGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGCCCACTTGGAGCAAAGAGTCTATGTAATGCATGCGGTGTCCGGTTCAAATCCGGACGGCTTTTTCCCGAATATAGACCGGCTAGTAGCCCGACGTTTTCGAACGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAAGAGAAAAACCCCACTCCGGCGTGGACTTAGTGTAA 807 47.83 MDMESAFKSTPKLLFDDFWSSNLQNASSPSSDHIFVDQFLNFSDEEQQEDEEKNNHSSVSPPLQLQQVHHDTDQNSNHSSTNSSEDDFWSITSTDFEDLDWLSHLVADSTQEEYSAPTPSVFLTHKPRNPLPNFQSYLNTPFPSKPRTKRPKISARVWSLTNLIPSPLPAKKSKKNHTDEGSGRVQAGRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPASSPTFSNELHSNHHRKVLEMRRKKEREKPHSGVDLV* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3627641 3628447 - Chy2G028640.1 Chy02g00597 220045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00597 268 PANTHER GATA TRANSCRIPTION FACTOR 169 260 - -
Chy02g00597 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 248 - -
Chy02g00597 268 PIRSF Txn_fac_GATA_plant 4 267 IPR016679 GO:0003677|GO:0005634|GO:0045893
Chy02g00597 268 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355|GO:0043565
Chy02g00597 268 MobiDBLite consensus disorder prediction 166 186 - -
Chy02g00597 268 MobiDBLite consensus disorder prediction 172 186 - -
Chy02g00597 268 PANTHER GATA TRANSCRIPTION FACTOR 26 161 - -
Chy02g00597 268 Gene3D - 182 262 IPR013088 GO:0006355|GO:0008270
Chy02g00597 268 MobiDBLite consensus disorder prediction 68 87 - -
Chy02g00597 268 Pfam GATA zinc finger 191 224 IPR000679 GO:0006355|GO:0043565
Chy02g00597 268 PANTHER GATA TRANSCRIPTION FACTOR 169 260 - -
Chy02g00597 268 PANTHER GATA TRANSCRIPTION FACTOR 26 161 - -
Chy02g00597 268 ProSiteProfiles GATA-type zinc finger domain profile. 185 221 IPR000679 GO:0006355|GO:0043565
Chy02g00597 268 SMART GATA_3 185 235 IPR000679 GO:0006355|GO:0043565
Chy02g00597 268 CDD ZnF_GATA 190 239 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00597 - - K21630 csv:105435937 535.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g00597 Chy07g01272 CCT
Chy02g00597 Chy07g01272 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00597 Chy-Chr2:3627641 Chy04g00936 Chy-Chr4:13453297 1.26E-38 dispersed
Chy07g01272 Chy-Chr7:17445238 Chy02g00597 Chy-Chr2:3627641 3.49E-48 transposed
Chy02g00597 Chy-Chr2:3627641 Chy07g01246 Chy-Chr7:17188135 1.23E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01261 CCT,ECH 116 369 C2C2-Gata Transcription Factor Family AT5G25830 57.4 1.0e-71 267.3
Chy02g00597 CCT,ECH 86 257 C2C2-Gata Transcription Factor Family AT4G34680 50.3 3.0e-37 152.5
Chy07g01272 CCT,ECH 25 185 C2C2-Gata Transcription Factor Family AT5G66320 62.3 7.2e-49 191.4
Chy07g01272 CCT,ECH 25 185 C2C2-Gata Transcription Factor Family AT3G51080 62.4 1.0e-44 177.6
Chy02g00597 CCT,ECH 95 256 C2C2-Gata Transcription Factor Family AT4G36240 52.9 1.5e-40 163.3
Chy07g01272 CCT,ECH 32 178 C2C2-Gata Transcription Factor Family AT4G36240 53.3 1.5e-37 153.3
Chy03g01261 CCT,ECH 118 369 C2C2-Gata Transcription Factor Family AT4G32890 53.0 1.3e-60 230.3
Chy04g00025 . 1 514 C2C2-Gata Transcription Factor Family AT4G17570 52.5 5.3e-136 481.5
Chy06g02089 . 69 571 C2C2-Gata Transcription Factor Family AT4G17570 52.9 1.4e-128 456.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17459 PF00320 GATA 1.10E-16 CL0167 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00597 Chy_Chr02 FPKM 10.693595 11.955337 9.300269 9.320619 8.129745 8.542315 8.677303 8.469539 8.135969 10.376371