Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00597 ATGGACATGGAGTCTGCTTTCAAATCCACCCCCAAACTTCTTTTCGATGACTTTTGGTCCTCCAATCTTCAAAACGCTTCATCCCCATCTTCCGACCACATTTTCGTAGATCAATTCCTCAACTTTTCAGATGAAGAACAGCAAGAAGATGAAGAAAAAAACAACCATTCCTCCGTTTCTCCTCCCCTTCAACTTCAACAAGTACATCACGACACCGACCAAAATTCCAACCACAGCTCCACCAATTCCTCTGAAGATGACTTTTGGTCTATTACTTCAACAGATTTTGAAGACCTTGACTGGCTCTCTCATCTCGTTGCCGATTCCACCCAAGAAGAATACTCTGCCCCAACTCCCTCTGTTTTCTTGACACACAAACCTAGAAATCCCCTTCCCAATTTTCAATCTTATCTCAACACCCCATTTCCTTCAAAACCCAGAACCAAGCGACCAAAAATCTCCGCCCGAGTCTGGTCTTTAACGAATTTAATTCCATCCCCGCTGCCGGCGAAGAAATCAAAGAAGAATCATACAGACGAGGGATCCGGGCGGGTCCAGGCGGGGCGCCGGTGCAGTCATTGTGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGCCCACTTGGAGCAAAGAGTCTATGTAATGCATGCGGTGTCCGGTTCAAATCCGGACGGCTTTTTCCCGAATATAGACCGGCTAGTAGCCCGACGTTTTCGAACGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAAGAGAAAAACCCCACTCCGGCGTGGACTTAGTGTAA 807 47.83 MDMESAFKSTPKLLFDDFWSSNLQNASSPSSDHIFVDQFLNFSDEEQQEDEEKNNHSSVSPPLQLQQVHHDTDQNSNHSSTNSSEDDFWSITSTDFEDLDWLSHLVADSTQEEYSAPTPSVFLTHKPRNPLPNFQSYLNTPFPSKPRTKRPKISARVWSLTNLIPSPLPAKKSKKNHTDEGSGRVQAGRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPASSPTFSNELHSNHHRKVLEMRRKKEREKPHSGVDLV* 269
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 3627641 3628447 - Chy2G028640.1 Chy02g00597 220045
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00597 268 PANTHER GATA TRANSCRIPTION FACTOR 169 260 - -
Chy02g00597 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 248 - -
Chy02g00597 268 PIRSF Txn_fac_GATA_plant 4 267 IPR016679 GO:0003677|GO:0005634|GO:0045893
Chy02g00597 268 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355|GO:0043565
Chy02g00597 268 MobiDBLite consensus disorder prediction 166 186 - -
Chy02g00597 268 MobiDBLite consensus disorder prediction 172 186 - -
Chy02g00597 268 PANTHER GATA TRANSCRIPTION FACTOR 26 161 - -
Chy02g00597 268 Gene3D - 182 262 IPR013088 GO:0006355|GO:0008270
Chy02g00597 268 MobiDBLite consensus disorder prediction 68 87 - -
Chy02g00597 268 Pfam GATA zinc finger 191 224 IPR000679 GO:0006355|GO:0043565
Chy02g00597 268 PANTHER GATA TRANSCRIPTION FACTOR 169 260 - -
Chy02g00597 268 PANTHER GATA TRANSCRIPTION FACTOR 26 161 - -
Chy02g00597 268 ProSiteProfiles GATA-type zinc finger domain profile. 185 221 IPR000679 GO:0006355|GO:0043565
Chy02g00597 268 SMART GATA_3 185 235 IPR000679 GO:0006355|GO:0043565
Chy02g00597 268 CDD ZnF_GATA 190 239 IPR000679 GO:0006355|GO:0043565
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Chy02g00597 Chy07g01272 CCT
Chy02g00597 Chy07g01272 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00597 Chy-Chr2:3627641 Chy04g00936 Chy-Chr4:13453297 1.26E-38 dispersed
Chy07g01272 Chy-Chr7:17445238 Chy02g00597 Chy-Chr2:3627641 3.49E-48 transposed
Chy02g00597 Chy-Chr2:3627641 Chy07g01246 Chy-Chr7:17188135 1.23E-11 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17459 PF00320 GATA 1.10E-16 CL0167 Chy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00597 - K21630 csv:105435937 535.413