Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00599 ATGGCTAGCGAGGCAACCAGAGAATTGCAATCATCAGTTGATTCGAAGAAGAAAGGCGTGGAGGAGGAGAAAGTAGAGAAAGAGGAAGAGAAAGAGAAGATGGTGAAATTGCCACCGCCGCCGGAAAAGCCGTTGCCGGGGGATTGTTGTGGGAGTGGATGTGTTCGATGTGTGTGGGACGTGTATTACGAAGAGCTTGAAGATTACAACAAGCTTTGCGAGAAAGGTAGTGGAGAAACAAAAAAGATGTTGACTCTGGTTTTGGCGGTGCTCACTCTCGCCGCCCTCTATCCTAGAGATGCCCTCACCGGAGCTGAAGCTGCCACTTCCACTTCCGCTTTCGTTCAGAACGTCATCTACTCTAACAGGATTGCTATGTTCTCCAAATCCTACTGCCCATATTGCTTGGGTGCCAAACGTATATTCAGTGAACTCCATGAAAAACCTTTTGTTGTGGAGCTTGATCTTCGAGATGATGGATCTCAAATTCAGAGTGTTCTACTAGACCTGACTGGAAAGCGGACTGTTCCTCAAATTTTTGTGAATGGCAAGCACATTGGTGGCTCTGATGATCTGAAAGCTGCGGTTGCCAATGGTCAGTTGCAGAAACTTCTGGCTTCAACTTGA 627 47.21 MASEATRELQSSVDSKKKGVEEEKVEKEEEKEKMVKLPPPPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKGSGETKKMLTLVLAVLTLAALYPRDALTGAEAATSTSAFVQNVIYSNRIAMFSKSYCPYCLGAKRIFSELHEKPFVVELDLRDDGSQIQSVLLDLTGKRTVPQIFVNGKHIGGSDDLKAAVANGQLQKLLAST* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3634156 3636108 + Chy2G028660.1 Chy02g00599 220047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00599 208 MobiDBLite consensus disorder prediction 1 40 - -
Chy02g00599 208 ProSiteProfiles Glutaredoxin domain profile. 112 208 - -
Chy02g00599 208 PANTHER GLUTAREDOXIN-C3 89 207 - -
Chy02g00599 208 PANTHER GLUTAREDOXIN 2 89 207 - -
Chy02g00599 208 Pfam Oxidoreductase-like protein, N-terminal 35 74 IPR019180 -
Chy02g00599 208 ProSitePatterns Glutaredoxin active site. 126 141 IPR011767 -
Chy02g00599 208 SUPERFAMILY Thioredoxin-like 113 206 IPR036249 -
Chy02g00599 208 TIGRFAM GRX_euk: glutaredoxin 124 205 IPR011899 -
Chy02g00599 208 Pfam Glutaredoxin 124 186 IPR002109 -
Chy02g00599 208 CDD GRX_GRXh_1_2_like 123 204 - -
Chy02g00599 208 Coils Coil 13 37 - -
Chy02g00599 208 MobiDBLite consensus disorder prediction 10 38 - -
Chy02g00599 208 PRINTS Glutaredoxin signature 169 182 IPR014025 -
Chy02g00599 208 PRINTS Glutaredoxin signature 124 142 IPR014025 -
Chy02g00599 208 PRINTS Glutaredoxin signature 183 196 IPR014025 -
Chy02g00599 208 Gene3D Glutaredoxin 105 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00599 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - pxb:103938023 238.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00599 Chy-Chr2:3634156 Chy02g02268 Chy-Chr2:26759511 2.46E-38 dispersed
Chy02g00599 Chy-Chr2:3634156 Chy09g00349 Chy-Chr9:3049679 4.04E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1065 . . . . . . . . . . . Cma07g00450 . Car07g00396 Sed14g1172 Cpe19g00839 . Bhi03g00897 Tan03g2045 Cmetu04g2228 . Hepe04g1567 . . Cla01g01954 Cam01g2043 Cec04g1701 Cco04g1766 Clacu01g2065 Cmu01g1942 Cre04g1616 . Cone12ag0734 . . Lsi01g00629 . . Cme08g00901 . Blo06g00329 . . . . . . . . Cmo07g00447 . . . . . . . . . . . . . . . . . . . . . Csa06g03296 Chy02g00599 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012931 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00599 Chy_Chr02 FPKM 10.705162 13.595018 13.240536 12.968329 13.035451 16.314173 12.531178 8.434712 9.485337 10.068106