Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00605 ATGGCAGCAGCTGCAGAAGCTACAGAGGGAGTAGTCATCCGTTGTATCACTATTGATTCATGGGAGCACCAAATTCAGCAGGGCAATGGCTCTAAAAAATTGATAGTTGTGGATTTCACTGCATCATGGTGTGGTCCATGTCGGTTCATTGCACCTTTCCTAGACGAGCTTGCTAGAAAACATCCCAATGTCACATTTTTGAAGGTTGATGTGGATGAACTGGAGTCGGTGGCTAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTTCTGAAAGAGGGAAGAATTCTGGACAAGGTAGTTGGAGCTAAGAAGGAAGAACTGCAACAGACCGTAGCGAAGCACTTGGCTACTGCTTCTGCCTGA 369 46.34 MAAAAEATEGVVIRCITIDSWEHQIQQGNGSKKLIVVDFTASWCGPCRFIAPFLDELARKHPNVTFLKVDVDELESVAKDWGVEAMPTFMFLKEGRILDKVVGAKKEELQQTVAKHLATASA* 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3678380 3679443 + Chy2G028720.1 Chy02g00605 220053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00605 122 SUPERFAMILY Thioredoxin-like 10 119 IPR036249 -
Chy02g00605 122 PANTHER THIOREDOXIN 7 118 - -
Chy02g00605 122 Pfam Thioredoxin 15 114 IPR013766 -
Chy02g00605 122 CDD TRX_family 31 114 - -
Chy02g00605 122 PANTHER THIOREDOXIN 7 118 - -
Chy02g00605 122 ProSitePatterns Thioredoxin family active site. 36 54 IPR017937 -
Chy02g00605 122 Gene3D Glutaredoxin 2 121 - -
Chy02g00605 122 PRINTS Thioredoxin family signature 35 43 - -
Chy02g00605 122 PRINTS Thioredoxin family signature 43 52 - -
Chy02g00605 122 PRINTS Thioredoxin family signature 82 93 - -
Chy02g00605 122 ProSiteProfiles Thioredoxin domain profile. 1 118 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00605 K03671 trxA; thioredoxin 1 - csv:101203181 247.669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00605 Chy-Chr2:3678380 Chy10g00485 Chy-Chr10:11096031 2.64E-43 dispersed
Chy12g01018 Chy-Chr12:15416678 Chy02g00605 Chy-Chr2:3678380 5.27E-28 dispersed
Chy02g00040 Chy-Chr2:285832 Chy02g00605 Chy-Chr2:3678380 3.29E-17 transposed
Chy02g01633 Chy-Chr2:15291555 Chy02g00605 Chy-Chr2:3678380 1.68E-16 transposed
Chy03g00060 Chy-Chr3:610559 Chy02g00605 Chy-Chr2:3678380 8.11E-10 transposed
Chy03g00860 Chy-Chr3:11825831 Chy02g00605 Chy-Chr2:3678380 1.39E-09 transposed
Chy08g00383 Chy-Chr8:9021981 Chy02g00605 Chy-Chr2:3678380 4.43E-08 transposed
Chy08g00565 Chy-Chr8:13235625 Chy02g00605 Chy-Chr2:3678380 7.83E-33 transposed
Chy08g00867 Chy-Chr8:16103472 Chy02g00605 Chy-Chr2:3678380 4.87E-10 transposed
Chy09g00120 Chy-Chr9:990995 Chy02g00605 Chy-Chr2:3678380 1.16E-27 transposed
Chy02g00605 Chy-Chr2:3678380 Chy03g01421 Chy-Chr3:16932781 1.74E-29 wgd
Chy02g00605 Chy-Chr2:3678380 Chy04g00470 Chy-Chr4:4387568 2.67E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00605 Chy_Chr02 FPKM 0.939716 0.57239 2.377923 4.140422 4.800364 4.172521 4.796085 4.615388 4.253271 4.195914