Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00612 ATGTCATCCGAACTCTATACAGTCGAAAACCCTAGAAAATGGCGCTTCACATGGGAAGCCCAATCCCATATACCAATTCTACGTTTATTGCTCTTCGACTCATTTACCAATCCTTCTCTTCAATGTCAGAATCTCAAGGTTCAGCTCAATCTCCAGCAGTCCGTCGTTTGTGTGGCTTGGTTACAAGACCTCGATATGTCGATTCGAGTTCCCATGCCTCCGGTTTTGGTTGATGCTGACTCGCCTTTGAGTTTTAGAGCTTTCGAAGACCATATTGAGGTCAAGCTCGTCTTGCTTCTCCCAGTTGACCACCCAATTATTCTCAACTTCGACAATGTGCTGGATTTCTCCCAAGAGCAAGGAAATAGCCACTCCAAGGCTTCGAAGCCACTTTCCATGGATTCTGATCAAATCAGTTTATCCCGCAGTGGTGGCGTCCACTTTTATTGCAGAAATTGTTCTTTCAGGCTCAGTAAATCCCCTCTCAGAGATTTCGTTGAAATGCCATCAGTCAACTGGCGAGAGGTGGCTGATAACTGGTTTGGGTCTTGCTGCTGCTCTTTCGGGGGAATAAGCGAGAAGCTGGTTAATAGGTACACAAATTCCTATAGATGTGAAAAGGGTGTCTGCCTACTCACTTTAACGACTATTACTCTTTCCAAGGATGACCTTATTGGCCACGTGTTCCCGGAAAATGAAGGAACCCAAGAACTCAAGGACGAATCAGATTTTGCTGATGGTGATTGTTTAACTGAAGCTAAGGAGGAATCGCCATGTAATCATATGTCTACAGAAAAGGTAAAATCTAAGCAGATCAACAATAAAAGCCTTTATGCAAACATGGAGGGTAGTGTTATTGAGAAGGCTAGTGATGAAGTTGATTCACGTATAGTGACTCCAATTCCGGACTGCTGTCATCATGAAGAGAGTAATGTACTTCATCATCTTGATAAGGATTGCATGCATCACACATGTGGCACAATTAAGTCAGACCCAAAGCCTATTAATGCTGTAGATATTTCGGACGATCAGAGATCCTTTCTTAATGGTTTTCTTGGAAATATCTTTATGGCTAGACTGTCAAATCTTTCAGCAGATTTTGAGTGGGCTGAGTTCTTTTGCCCCCAGTGCTCAACTCTGATTGGAGCTTACCCTTGGAGAAATGGCTGTGGACCTACAGATGGCGGAGTTCGGTTTTTTAAATGTTATGTCTCAACATGTTTAGCAGCTGAATCTGGAAATTTATTGAGGGAGTACACGTTGGAAAGAATGTTTGCAAATCAGTTACTGGAAAGTGCGCATGAAGAATCATCATTTCGTACTTTGGTTAAGGAGTTGAAAACCAAGTCTCCCATGCTGCACATTGTTCTCATCAACTCAAATTCTTGGTCTTGCAGTGGTTATTGTTTGGGCATGGAGGATACTGCCGAATTTGTTCCAAAGGTGGACTTGAATCCAATCATCAAGGTGCTATTTTCAGATTGCAACAAAAGTGCAGAATCTCACTTGAGGAAACTTGAAGAGTGGGTGACAAAAGATATAGCAGATGAAGTTTTTATGTTAGCCCATCAAATAGAGGAATTAGTTGAAATTCTAGTTTCAAGAAATGATACACTTCCATCTTCATGTTCTTCCCTTGATGGTTTAACTTTGACATCTATCCTGCGATCTGTTTATCATCAAGCCATATTCTATCACGAGAAACTTCTTAAACGTACTGGCTTGGTGGAGTATTTTATTTTACATTTGGAGTTAACCACACATCTTGGAACCTGCTTGGTTACGGCATTAGTTGTCACTCATCAAGGTGCTCAACTCGGAGATCCACAAAACGGAGCTATTCACTTCAACGTTTCAGGTGTCCTTTTACAGGCTGTTGAAATGAATGCTATTGCAGTCCCAAGTTCCAACTGCTATGTTTTTGACAATTCTAGTCACATTATTGACTTTAGTAGCTGGGTTGGACAACCATTTGAATACGACGAGAAGGATTCTGACTTGGTGGTTCGGTTTTGCAAAGATGTGGAGAGTAGATCACAGATGGGATATGTAGATTTTGGTCGATTTGACAAATTCAATTCCTTTGTCTCTGGTTCAGGGCATGCCAACTTTGTTCAAGATTATTACTATGGTGACCTGACTTCTTGTGAGCAGAGTCATGACAAATTGGGGAGGACTGCACTGGTAAATGTTATATGTGGAAGTTGTTTAAATGGACAATGTAAAGGTGGTCTGGGATGCATCTGCAATATCACTTATGAGTCCAGTTGCAGAGTTATTGTTGATCTGGCCATTCCTTGTGCGAACCAAGGCCCACGTGTTTTTAAAGGATTTACTGTTGGTTTTCACCCCCGATCCTGGGAAATTGTTTACAATGGTTTGACTCAATTAGGCTTTGAGAAACCACATCGTGCATTCAGTTTCAGCACAGAGCAGACTAGTGTGGCTCTTTATATGACTGCCATTGCATCACTTTCCTCTTTGATACAGAAACCAATCGTTCAGGTTTATCCAGAAAATGGACTAGAGGTGAAAGTATCAGGCTCAGGGGCAACTGGGAGCTACCCTACAACTTTGTCACCCTCAATGTTGATGATTGACTGGAGATGTTATGTTGTTAGAGACATTCCATACGAAGTTAATGTTACAATCCCCGTGGCTGATTACGAACCAGTTAGTTTTTTTCTTACCAAAATGTGTGAAAAAAGGCAGGACGTACAAGGGGATTCTACGAAAGGATGGGCCACATTTGGAATACTCTCTTGCATATTCATAGTCATTGCATCACTATTTTGCTGTGGAGGATTTGTTTATAAGGCCCGAGTGCAAGGCCAGCGTGGAATTGATGCATTGCCGGGCATGGCACTATTATCCGCCTGCTTGGAAACTGTGACTGGTGCAGGACCGAGCTACCCGAGAGCTGAAGGCATCAATAGCGGGTCGGTTAGCGAAGCCTCGTGGGATCACCCACCATCCTCTTCCTCTTCTCGACGGACTTGGACACCAACTGACAAAAATTATGGTTCAATATGA 3033 42.5 MSSELYTVENPRKWRFTWEAQSHIPILRLLLFDSFTNPSLQCQNLKVQLNLQQSVVCVAWLQDLDMSIRVPMPPVLVDADSPLSFRAFEDHIEVKLVLLLPVDHPIILNFDNVLDFSQEQGNSHSKASKPLSMDSDQISLSRSGGVHFYCRNCSFRLSKSPLRDFVEMPSVNWREVADNWFGSCCCSFGGISEKLVNRYTNSYRCEKGVCLLTLTTITLSKDDLIGHVFPENEGTQELKDESDFADGDCLTEAKEESPCNHMSTEKVKSKQINNKSLYANMEGSVIEKASDEVDSRIVTPIPDCCHHEESNVLHHLDKDCMHHTCGTIKSDPKPINAVDISDDQRSFLNGFLGNIFMARLSNLSADFEWAEFFCPQCSTLIGAYPWRNGCGPTDGGVRFFKCYVSTCLAAESGNLLREYTLERMFANQLLESAHEESSFRTLVKELKTKSPMLHIVLINSNSWSCSGYCLGMEDTAEFVPKVDLNPIIKVLFSDCNKSAESHLRKLEEWVTKDIADEVFMLAHQIEELVEILVSRNDTLPSSCSSLDGLTLTSILRSVYHQAIFYHEKLLKRTGLVEYFILHLELTTHLGTCLVTALVVTHQGAQLGDPQNGAIHFNVSGVLLQAVEMNAIAVPSSNCYVFDNSSHIIDFSSWVGQPFEYDEKDSDLVVRFCKDVESRSQMGYVDFGRFDKFNSFVSGSGHANFVQDYYYGDLTSCEQSHDKLGRTALVNVICGSCLNGQCKGGLGCICNITYESSCRVIVDLAIPCANQGPRVFKGFTVGFHPRSWEIVYNGLTQLGFEKPHRAFSFSTEQTSVALYMTAIASLSSLIQKPIVQVYPENGLEVKVSGSGATGSYPTTLSPSMLMIDWRCYVVRDIPYEVNVTIPVADYEPVSFFLTKMCEKRQDVQGDSTKGWATFGILSCIFIVIASLFCCGGFVYKARVQGQRGIDALPGMALLSACLETVTGAGPSYPRAEGINSGSVSEASWDHPPSSSSSRRTWTPTDKNYGSI* 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3715829 3726810 - Chy2G028790.1 Chy02g00612 220060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00612 1010 PANTHER G-PROTEIN COUPLED RECEPTOR 617 1010 - -
Chy02g00612 1010 MobiDBLite consensus disorder prediction 978 1010 - -
Chy02g00612 1010 Pfam HECT-like Ubiquitin-conjugating enzyme (E2)-binding 124 544 IPR019193 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00612 - - - csv:101204887 1127.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1044 . . . . . . Bma09g00091 . . . Cma03g00717 Cma07g00464 Car03g00657 Car07g00411 . Cpe19g00826 Cpe10g00639 Bhi03g00913 . . . . . . . . . . . . . . . . Cone9ag1574 Lsi01g00642 . . Cme08g00889 . . . . . . . . . Cmo03g00743 Cmo07g00462 . . . . . . . . . . . . . . . . . . . . . Csa06g03284 Chy02g00612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002272 2 6 1 2 1 2 3 1 1 1 1 1 3 2 1 3 1 2 3 2 2 2 2 1 2 2 1 5 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00612 Chy_Chr02 FPKM 37.899017 38.181839 65.875801 64.279175 35.022064 33.745419 35.549507 26.65592 25.219099 23.415821