Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00625 ATGGAGGTTAGTAAAATACTTCATATGAATTCAGGAGTTGGAGACGAAAGCTATGCCAAAAACTCCTTACTTCAGAAGAAGGCAACATCCATAGCATGGCCAGTTATAAAGAAAGCCATTGAAGACTTGTGCAGTGAAAATAATAATCCAATTACCAGTTTAAGCATTGCAGATTTGGGATGTTCTTCAGGACCAAACACTCTTGCAATCATCTCCAATTTAATCAAACACATTGAGCTTCACAATAACAAACCATTCCAATATCAAATCTTCTTCAACGATCTACCTTCAAACGATTTCAATTCCATTTTTATATCCTTACAAAATTTCCTTGAAGATTTGAAAAATCAAATTGGAGCTGATTTTGGAACTTGTTTCTTCAATGGAGTCCCTGGTTCTTTTTATGGTAGACTTTTTCCCGACAAAAGTTTACATTTTGTTCATTCTTGTTATAGCCTTCAATGGTTGTCTCAGGTTCCAAAAGAAATGGAGATGATAAACAAAGGGAACATATTCATAGACAGTACAAGTCCAAAGAATGTGATAGAGGGGTATTATAAGCAATTTCAAAAGGATTTCTCATTGTTTTTGAAGTGTCGTGGAGAAGAAGTAGTACGTGGTGGACGAATGGTTGTTACCTTGGTAGGAAGAACAGATGAATATCCATCATATCAAGATTATTGTTACGCTTTTACACTTCTGAATTTAGCTCTCAATAACATGGTTGCTGAGGGGATTGTGGAAGAGGAGAAAGTGGATAGATTCAATATCCCAAATTTCATGCCAAGTCCAAAGGAAATAAAAGAAGAGGTTTTAAAAGAAGGAAATTTCATCATCAATGAACTTAAAGTTTCAAAAATTGATTGGAATTTCTACAATACTGAATTGGAAGGAACAAAGCATGTGTTTGTGGATAGCAGTTACAGTGTTGCAAAATGCATTAGATCTGTGATTGAATCACTTATGATTCCTCACTTTGGAGAAGCCATTGTTGAAGAATTATTTTATAGGTATAGTAAAATAGTGAAGGATGAGATGTCAAACAAAAGGAGTGTGTTCACAAACCTCACTATTTCCCTTACTAGAATCTAA 1092 34.62 MEVSKILHMNSGVGDESYAKNSLLQKKATSIAWPVIKKAIEDLCSENNNPITSLSIADLGCSSGPNTLAIISNLIKHIELHNNKPFQYQIFFNDLPSNDFNSIFISLQNFLEDLKNQIGADFGTCFFNGVPGSFYGRLFPDKSLHFVHSCYSLQWLSQVPKEMEMINKGNIFIDSTSPKNVIEGYYKQFQKDFSLFLKCRGEEVVRGGRMVVTLVGRTDEYPSYQDYCYAFTLLNLALNNMVAEGIVEEEKVDRFNIPNFMPSPKEIKEEVLKEGNFIINELKVSKIDWNFYNTELEGTKHVFVDSSYSVAKCIRSVIESLMIPHFGEAIVEELFYRYSKIVKDEMSNKRSVFTNLTISLTRI* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3824103 3825931 + Chy2G028920.1 Chy02g00625 220073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00625 363 Gene3D Vaccinia Virus protein VP39 21 288 IPR029063 -
Chy02g00625 363 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 349 IPR005299 GO:0008168
Chy02g00625 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 362 IPR029063 -
Chy02g00625 363 Pfam SAM dependent carboxyl methyltransferase 39 362 IPR005299 GO:0008168
Chy02g00625 363 Gene3D - 6 349 IPR042086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00625 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - csv:101209890 691.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00623 Chy-Chr2:3798823 Chy02g00625 Chy-Chr2:3824103 5.45E-126 dispersed
Chy02g00625 Chy-Chr2:3824103 Chy04g00482 Chy-Chr4:4605813 2.20E-94 dispersed
Chy10g00280 Chy-Chr10:6985867 Chy02g00625 Chy-Chr2:3824103 2.34E-49 dispersed
Chy02g00624 Chy-Chr2:3805480 Chy02g00625 Chy-Chr2:3824103 9.92E-142 tandem
Chy02g00625 Chy-Chr2:3824103 Chy02g00626 Chy-Chr2:3828811 3.63E-70 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1019 . . . . . . . . . . Cma03g00730 . . . . . . . . . . . . . . . . . . . . . . . . Lsi01g00658 . . Cme08g00869 Blo05g00807 . . . . . . . . Cmo03g00758 Cmo07g00472 . . . . . . . . . . . . . . . . . . . . . . Chy02g00625 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00625 Chy_Chr02 FPKM 4.570226 4.999142 2.496024 2.374631 5.096264 4.665932 5.96713 1.94544 1.36294 2.11729