Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00640 ATGAACGACTTGATGACGAAATCGTTCTTAAGTTATGTAGAATTGAAGAAACAGGCGCAGAGGGAAGCTGTAGGCGGTGGCGGCCACGGCTTCGACATTGAATCCGGTGGCCAAAAACTGAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAAAAAGTCGATGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAGAAACTAAATCAAGAAGCCAAATCAACCCACAACGCCAAAATCCTCCGTGGATTAAGAGACAGAATCGACTCGGATATGGTTTCAACCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCCAACCGCCTGATCTCCGTCGCATACGGCGAAGGAACCATCGTGGACAGGACAAGAACTTCAATCACGAACGGATTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAGGGGTTGAGAGAAAAAGTTGTGGCGGATCATAAGGAAGATCTAAGAAGAAGGTATTTTAGTGCAACTGGGGAACAACCCAGTGAAGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAACGTTAGGAGGGAAATTGAGTGAGACCGAGTCAGAGGACCGAGTGAGGCACGAGTCAGTGATGGATATACAGAAGAGTTTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAAATCGAGGATATTGAAGAGAATGTGGCGAAAGCTGGGCAGTTCATCAACGGCGGAACTCGAAGCCTTTATTATGCGAAGCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATGTTGGTTTGTTGA 918 44.23 MNDLMTKSFLSYVELKKQAQREAVGGGGHGFDIESGGQKLNPTEEQNLSLFFEKVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSTLRRARILKEKLASLDQSNTANRLISVAYGEGTIVDRTRTSITNGLRVKLREMMNEFQGLREKVVADHKEDLRRRYFSATGEQPSEEQVEKIMSGSLKLETLGGKLSETESEDRVRHESVMDIQKSLNKLHQVFLDMAILVESEGEKIEDIEENVAKAGQFINGGTRSLYYAKQMKRKNKKWVYWVWAIIFVILLVCIVSMLVC* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3907457 3908374 + Chy2G029070.1 Chy02g00640 220088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00640 305 Coils Coil 55 75 - -
Chy02g00640 305 PANTHER SYNTAXIN-112 4 301 - -
Chy02g00640 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Chy02g00640 305 CDD SNARE_syntaxin1-like 217 270 - -
Chy02g00640 305 Gene3D - 43 176 - -
Chy02g00640 305 SMART tSNARE_6 206 273 IPR000727 -
Chy02g00640 305 SMART SynN_4 43 170 IPR006011 GO:0016020
Chy02g00640 305 SUPERFAMILY t-snare proteins 47 266 IPR010989 GO:0016020|GO:0016192
Chy02g00640 305 CDD SynN 51 198 IPR006011 GO:0016020
Chy02g00640 305 PANTHER SYNTAXIN 4 301 IPR045242 -
Chy02g00640 305 Gene3D - 206 304 - -
Chy02g00640 305 Pfam Syntaxin 51 246 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00640 Chy-Chr2:3907457 Chy08g00517 Chy-Chr8:12391637 2.93E-73 dispersed
Chy02g00640 Chy-Chr2:3907457 Chy04g01850 Chy-Chr4:24681494 3.66E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00640 K08486 - csv:101217836 584.334