Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00642 ATGAAAAATGGGATTAGAATCAGACCGAAGCGAGGGGGAGAAGGGAGGAATTGGCGAAGTCGTACAAGGTCACATATTGCACCTGATGAAGTGCCTCCTCAACCTGAAGTTATACAACAAGGGCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGAAGAGTTGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGTCGTTCTTTTTTGTGCTTCAGTTTGCAAGTCATGGAGAAAAATTACATTGGAAATTGTTAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCGCTTAAACAGCCGGGACCTCGAGACTCTCCAATTCAATGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTTTTATTAGCAGCCAAGAGAATAAGAAGGGCTACGGGTACAGATTTTGTTGTATCTTTGGTAGCTGATGATTTTTCTAGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAACTTTTTTGGCTCAAGATTCATCGTGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAGCAATCAATCAAATCGTAGGTTTCATGCCAAGCAAATCTCTCCAACAATGTCAGCTTGCAACTACTCTATAGGGTCAATCTCTTATGAGCTTAATATTCTACGAACTAGAGGACCACGAAGAATGCGTTGTGTAATGCAGTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCAACCTCATTCTCGTCCTGCCTTAATGAACATCACCACCACCTACCTTTACCGACTTCTAAAGGAAAGGAGTCAGACATAGATTTCAGTTCCACAAGTATCACTGAGCCACCAGTTCAAGATTTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAGCTTCAATGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAAAATTTCCAACTCGTGGCTGATGTCGATCCAGCCCTCGATGTGTCAGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGAAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTATCCGCTCTCCGCTTTCCAAGCCTTTGCAATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1209 44.33 MKNGIRIRPKRGGEGRNWRSRTRSHIAPDEVPPQPEVIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRKITLEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRIRRATGTDFVVSLVADDFSRACSTYVGKLRSNFFGSRFIVYDSQPPVLTAGQQSNQSNRRFHAKQISPTMSACNYSIGSISYELNILRTRGPRRMRCVMQSIPASCIQQGGNAPTPTSFSSCLNEHHHHLPLPTSKGKESDIDFSSTSITEPPVQDLGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3917442 3919458 + Chy2G029090.1 Chy02g00642 220090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00642 402 SUPERFAMILY F-box domain 37 85 IPR036047 GO:0005515
Chy02g00642 402 Pfam F-box domain 43 89 IPR001810 GO:0005515
Chy02g00642 402 MobiDBLite consensus disorder prediction 1 33 - -
Chy02g00642 402 Gene3D - 37 90 - -
Chy02g00642 402 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 402 - -
Chy02g00642 402 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 380 402 IPR000007 -
Chy02g00642 402 ProSitePatterns Tub family signature 1. 330 343 IPR018066 -
Chy02g00642 402 MobiDBLite consensus disorder prediction 7 26 - -
Chy02g00642 402 ProSitePatterns Tub family signature 2. 387 402 IPR018066 -
Chy02g00642 402 Gene3D Tubby Protein; Chain A 101 402 IPR025659 -
Chy02g00642 402 PANTHER TUBBY-RELATED 1 402 - -
Chy02g00642 402 SUPERFAMILY Tubby C-terminal domain-like 92 402 IPR025659 -
Chy02g00642 402 Pfam Tub family 104 397 IPR000007 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00642 Chy07g01239 CCT
Chy02g00642 Chy07g01239 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00642 Chy-Chr2:3917442 Chy11g01469 Chy-Chr11:21443334 3.18E-149 dispersed
Chy02g00642 Chy-Chr2:3917442 Chy04g00489 Chy-Chr4:4705059 8.23E-180 wgd
Chy02g00642 Chy-Chr2:3917442 Chy07g01239 Chy-Chr7:17147729 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17462 PF01167 Tub 5.00E-102 CL0395 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00642 K19600 - csv:101221704 813.142