Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00642 ATGAAAAATGGGATTAGAATCAGACCGAAGCGAGGGGGAGAAGGGAGGAATTGGCGAAGTCGTACAAGGTCACATATTGCACCTGATGAAGTGCCTCCTCAACCTGAAGTTATACAACAAGGGCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGAAGAGTTGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGTCGTTCTTTTTTGTGCTTCAGTTTGCAAGTCATGGAGAAAAATTACATTGGAAATTGTTAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCGCTTAAACAGCCGGGACCTCGAGACTCTCCAATTCAATGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTTTTATTAGCAGCCAAGAGAATAAGAAGGGCTACGGGTACAGATTTTGTTGTATCTTTGGTAGCTGATGATTTTTCTAGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAACTTTTTTGGCTCAAGATTCATCGTGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAGCAATCAATCAAATCGTAGGTTTCATGCCAAGCAAATCTCTCCAACAATGTCAGCTTGCAACTACTCTATAGGGTCAATCTCTTATGAGCTTAATATTCTACGAACTAGAGGACCACGAAGAATGCGTTGTGTAATGCAGTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCAACCTCATTCTCGTCCTGCCTTAATGAACATCACCACCACCTACCTTTACCGACTTCTAAAGGAAAGGAGTCAGACATAGATTTCAGTTCCACAAGTATCACTGAGCCACCAGTTCAAGATTTGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAGCTTCAATGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAAAATTTCCAACTCGTGGCTGATGTCGATCCAGCCCTCGATGTGTCAGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGAAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTATCCGCTCTCCGCTTTCCAAGCCTTTGCAATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1209 44.33 MKNGIRIRPKRGGEGRNWRSRTRSHIAPDEVPPQPEVIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLFCASVCKSWRKITLEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRIRRATGTDFVVSLVADDFSRACSTYVGKLRSNFFGSRFIVYDSQPPVLTAGQQSNQSNRRFHAKQISPTMSACNYSIGSISYELNILRTRGPRRMRCVMQSIPASCIQQGGNAPTPTSFSSCLNEHHHHLPLPTSKGKESDIDFSSTSITEPPVQDLGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3917442 3919458 + Chy2G029090.1 Chy02g00642 220090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00642 402 SUPERFAMILY F-box domain 37 85 IPR036047 GO:0005515
Chy02g00642 402 Pfam F-box domain 43 89 IPR001810 GO:0005515
Chy02g00642 402 MobiDBLite consensus disorder prediction 1 33 - -
Chy02g00642 402 Gene3D - 37 90 - -
Chy02g00642 402 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 402 - -
Chy02g00642 402 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Chy02g00642 402 PRINTS Tubby superfamily signature 380 402 IPR000007 -
Chy02g00642 402 ProSitePatterns Tub family signature 1. 330 343 IPR018066 -
Chy02g00642 402 MobiDBLite consensus disorder prediction 7 26 - -
Chy02g00642 402 ProSitePatterns Tub family signature 2. 387 402 IPR018066 -
Chy02g00642 402 Gene3D Tubby Protein; Chain A 101 402 IPR025659 -
Chy02g00642 402 PANTHER TUBBY-RELATED 1 402 - -
Chy02g00642 402 SUPERFAMILY Tubby C-terminal domain-like 92 402 IPR025659 -
Chy02g00642 402 Pfam Tub family 104 397 IPR000007 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00642 K19600 TUB, TULP; tubby and related proteins - csv:101221704 813.142
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g00642 Chy07g01239 CCT
Chy02g00642 Chy07g01239 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00642 Chy-Chr2:3917442 Chy11g01469 Chy-Chr11:21443334 3.18E-149 dispersed
Chy02g00642 Chy-Chr2:3917442 Chy04g00489 Chy-Chr4:4705059 8.23E-180 wgd
Chy02g00642 Chy-Chr2:3917442 Chy07g01239 Chy-Chr7:17147729 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01095 . 1 429 TUB Transcription Factor Family AT1G76900 69.9 1.9e-169 592.4
Chy03g00507 . 1 433 TUB Transcription Factor Family AT1G76900 69.4 4.2e-169 591.3
Chy11g01469 CCT,ECH 13 387 TUB Transcription Factor Family AT1G76900 50.9 7.8e-115 411.0
Chy06g00654 CCT,ECH 13 388 TUB Transcription Factor Family AT1G76900 51.3 1.6e-112 403.3
Chy02g00642 CCT,ECH 38 403 TUB Transcription Factor Family AT1G76900 51.9 1.3e-106 383.6
Chy03g00407 . 1 190 TUB Transcription Factor Family AT1G76900 77.3 5.6e-81 298.5
Chy06g01095 . 174 429 TUB Transcription Factor Family AT1G25280 74.3 5.8e-102 367.5
Chy03g00507 . 175 433 TUB Transcription Factor Family AT1G25280 70.4 2.2e-93 339.0
Chy07g01239 CCT,ECH 244 482 TUB Transcription Factor Family AT1G25280 56.8 4.1e-71 265.0
Chy06g00654 CCT,ECH 154 388 TUB Transcription Factor Family AT1G25280 53.7 9.1e-71 263.8
Chy04g00489 . 180 412 TUB Transcription Factor Family AT1G25280 54.7 2.5e-68 255.8
Chy11g01469 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.0 7.9e-67 250.8
Chy02g00642 CCT,ECH 164 403 TUB Transcription Factor Family AT1G25280 51.7 8.8e-66 247.3
Chy11g01469 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.9 1.9e-98 355.9
Chy06g00654 CCT,ECH 98 388 TUB Transcription Factor Family AT5G18680 64.0 4.3e-98 354.8
Chy03g00507 . 112 433 TUB Transcription Factor Family AT5G18680 52.9 1.8e-83 306.2
Chy06g01095 . 113 429 TUB Transcription Factor Family AT5G18680 53.0 8.8e-83 303.9
Chy07g01239 CCT,ECH 185 482 TUB Transcription Factor Family AT5G18680 53.8 3.5e-79 292.0
Chy07g01239 CCT,ECH 39 481 TUB Transcription Factor Family AT2G18280 58.1 1.0e-139 493.4
Chy02g00642 CCT,ECH 7 402 TUB Transcription Factor Family AT2G18280 61.7 1.7e-134 476.1
Chy04g00489 . 1 411 TUB Transcription Factor Family AT2G18280 60.0 1.5e-125 446.4
Chy06g01095 . 1 428 TUB Transcription Factor Family AT2G18280 53.1 2.7e-119 425.6
Chy06g00654 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 54.1 1.0e-115 413.7
Chy03g00507 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Chy11g01469 CCT,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.2 2.4e-112 402.5
Chy07g00990 . 50 381 TUB Transcription Factor Family AT2G18280 50.4 1.5e-93 340.1
Chy03g00407 . 1 190 TUB Transcription Factor Family AT2G18280 53.1 6.4e-49 191.8
Chy06g00654 CCT,ECH 1 388 TUB Transcription Factor Family AT2G47900 68.3 7.1e-160 560.5
Chy11g01469 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 68.3 1.3e-158 556.2
Chy06g01095 . 1 429 TUB Transcription Factor Family AT2G47900 56.7 6.9e-131 464.2
Chy03g00507 . 1 433 TUB Transcription Factor Family AT2G47900 56.5 9.1e-131 463.8
Chy07g01239 CCT,ECH 39 482 TUB Transcription Factor Family AT2G47900 52.3 2.3e-118 422.5
Chy04g00489 . 10 412 TUB Transcription Factor Family AT2G47900 55.5 1.5e-117 419.9
Chy02g00642 CCT,ECH 10 403 TUB Transcription Factor Family AT2G47900 52.5 1.4e-110 396.7
Chy07g00990 . 51 381 TUB Transcription Factor Family AT2G47900 51.5 1.6e-98 356.7
Chy03g00407 . 1 190 TUB Transcription Factor Family AT2G47900 56.0 2.1e-58 223.4
Chy01g01931 . 84 299 TUB Transcription Factor Family AT1G16070 62.7 1.5e-74 276.6
Chy06g01095 . 66 429 TUB Transcription Factor Family AT1G43640 68.1 4.7e-147 517.7
Chy03g00507 . 65 433 TUB Transcription Factor Family AT1G43640 65.9 1.0e-141 500.0
Chy11g01469 CCT,ECH 47 387 TUB Transcription Factor Family AT1G43640 52.1 6.9e-106 380.9
Chy06g00654 CCT,ECH 49 388 TUB Transcription Factor Family AT1G43640 53.6 1.2e-105 380.2
Chy04g00489 . 69 412 TUB Transcription Factor Family AT1G43640 50.7 1.6e-99 359.8
Chy02g00642 CCT,ECH 55 403 TUB Transcription Factor Family AT1G43640 50.4 1.2e-94 343.6
Chy03g00407 . 67 190 TUB Transcription Factor Family AT1G43640 79.8 5.5e-55 211.8
Chy04g00489 . 34 412 TUB Transcription Factor Family AT1G47270 64.6 2.2e-134 475.7
Chy02g00642 CCT,ECH 21 403 TUB Transcription Factor Family AT1G47270 57.0 1.1e-120 430.3
Chy07g01239 CCT,ECH 72 482 TUB Transcription Factor Family AT1G47270 54.4 1.3e-118 423.3
Chy06g01095 . 1 429 TUB Transcription Factor Family AT1G47270 52.2 1.1e-114 410.2
Chy03g00507 . 48 433 TUB Transcription Factor Family AT1G47270 53.5 6.9e-112 401.0
Chy11g01469 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 50.9 1.0e-107 387.1
Chy06g00654 CCT,ECH 1 388 TUB Transcription Factor Family AT1G47270 50.4 4.0e-104 375.2
Chy03g00407 . 30 190 TUB Transcription Factor Family AT1G47270 54.2 1.7e-46 183.7
Chy07g00990 . 1 381 TUB Transcription Factor Family AT1G53320 71.4 3.2e-154 541.6
Chy11g01469 CCT,ECH 22 387 TUB Transcription Factor Family AT1G53320 50.8 2.0e-103 372.9
Chy06g00654 CCT,ECH 22 388 TUB Transcription Factor Family AT1G53320 50.3 1.9e-98 356.3
Chy06g00654 CCT,ECH 98 388 TUB Transcription Factor Family AT3G06380 64.4 1.8e-96 349.4
Chy11g01469 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 62.6 3.3e-95 345.1
Chy06g01095 . 117 429 TUB Transcription Factor Family AT3G06380 54.0 4.2e-82 301.6
Chy03g00507 . 116 433 TUB Transcription Factor Family AT3G06380 52.8 1.8e-80 296.2
Chy07g01239 CCT,ECH 185 482 TUB Transcription Factor Family AT3G06380 53.4 8.8e-80 293.9
Chy04g00489 . 120 412 TUB Transcription Factor Family AT3G06380 53.2 1.7e-78 289.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17462 PF01167 Tub 5.00E-102 CL0395 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00642 Chy_Chr02 FPKM 111.5056 118.274498 151.77475 147.799515 160.690613 176.168655 159.112045 187.471634 202.54686 194.146103