Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00663 ATGCCAGCCGATTTAGAGAATTCCCCTTCGGTTTCCGGCGAACCTACTGTCTCTTCCCTTGGAAACACCGATCCGCCGCCCAAATCCACCGTTAAGAAAAAAAGAAATCTACCCGGAATGCCAGATCCGGATGCGGAAGTGATTGCTCTCTCCCCGAAGACCCTTTTGGCCACCAATCGATTTGTTTGTGAGATTTGCAACAAAGGGTTTCAGAGGGATCAGAATCTGCAGCTTCATCGGCGTGGTCATAATCTTCCATGGAAGCTCCGGCAAAGGTCCAGTAATGAGGTGAAGAAGAAGGTCTATGTTTGCCCTGAGACTTCTTGTGTTCATCACGATCCTTCTAGAGCTCTGGGTGATTTGACTGGGATTAAGAAGCACTTTTGCCGAAAGCATGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGTACTAGAGAATACAAATGCGATTGTGGTACTCTCTTTTCCAGAAGGGATAGCTTCATTACCCATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAAGCTCAGCCTCAGTCGTTGGTGGACAAACCGGTTTCTAATTCTTCTCAGAAAGCGGTGGAGCCGGTGGAGCCAAATCCAAAGCTATCTCCGCCGCCGTCACCTCCGGCGGCTGCATCTCCTCCTCAATCAGCTTGTGTTCTATCTCCTCCTGTTTTGCCGATTCAAAGTCAAGATCAATCGGAGAATCCATCCCAATATAATGAAGAAGCACCTGTTACCACGGGCATGAGTGGTAGCTGCAGCAGCAGCAAGAGTCCGAGCAGCAACAGCAGTTCAAGTAGTCGATTTGCTAGCTTGTTTGCTTCCACAACCACATCCATAAGCCTGCAACCTCCTCAACCGCCTGCGTTTACTGACATGATGCATGTTATGGCTTGTTCGGATCCCTCATCTGACTATGCTCCAACGACGTCTACCGAGCCTATTTCTCTGTGTCTTTCAACTACCCACGGGGCATCAATTTTTGGGGCTGCTAGCCAAGACCTCCGACAGTACACACCAGCTCCACAACCTGCAATGTCCGCCACTGCATTACTACAAAAGGCTGCTCAAATGGGAGCAGCAGCTTCAAATGCCTCATTCCTTCGCGGTTTAGGCTTAGTACCATCCTCCTCTTTGGCTACGCCACAAGAGAGCTTGCCATGGAATCAAAGGCAAGTCGAACCAGATGGAATCTCAATCGCTGCAGGGCTTGGGCTTGGACTCCCTTGCGATGGAAACTCTGGACTGAAAGAACTAATGAGAGGCAACCATTCACTATTTGCTCCGAAACACACCACTCTCGATTTCCTCGGATTGGGTATGGCAGCTGGTGGTAGCCCCAACAACAGAGGATTGGCTGCACTAATCACATCGATCGGCGGAGGCATGGATGTTGGCACAACGACTGGATCCTACGGAGGTGGTGACATTTCGAGCAAAGATATGAACAGAAACAATTAA 1524 49.08 MPADLENSPSVSGEPTVSSLGNTDPPPKSTVKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVKKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPQSLVDKPVSNSSQKAVEPVEPNPKLSPPPSPPAAASPPQSACVLSPPVLPIQSQDQSENPSQYNEEAPVTTGMSGSCSSSKSPSSNSSSSSRFASLFASTTTSISLQPPQPPAFTDMMHVMACSDPSSDYAPTTSTEPISLCLSTTHGASIFGAASQDLRQYTPAPQPAMSATALLQKAAQMGAAASNASFLRGLGLVPSSSLATPQESLPWNQRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSLFAPKHTTLDFLGLGMAAGGSPNNRGLAALITSIGGGMDVGTTTGSYGGGDISSKDMNRNN* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4027016 4029247 + Chy2G029300.1 Chy02g00663 220111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00663 507 MobiDBLite consensus disorder prediction 199 214 - -
Chy02g00663 507 Gene3D Classic Zinc Finger 41 111 - -
Chy02g00663 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Chy02g00663 507 MobiDBLite consensus disorder prediction 1 43 - -
Chy02g00663 507 MobiDBLite consensus disorder prediction 9 26 - -
Chy02g00663 507 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Chy02g00663 507 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Chy02g00663 507 MobiDBLite consensus disorder prediction 243 288 - -
Chy02g00663 507 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 506 - -
Chy02g00663 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 506 - -
Chy02g00663 507 MobiDBLite consensus disorder prediction 218 233 - -
Chy02g00663 507 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Chy02g00663 507 Gene3D Classic Zinc Finger 130 196 - -
Chy02g00663 507 SMART c2h2final6 61 83 IPR013087 -
Chy02g00663 507 SMART c2h2final6 102 132 IPR013087 -
Chy02g00663 507 SMART c2h2final6 137 157 IPR013087 -
Chy02g00663 507 MobiDBLite consensus disorder prediction 196 288 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00663 Chy07g01281 CCT
Chy02g00663 Chy07g01281 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00470 Chy-Chr1:3401406 Chy02g00663 Chy-Chr2:4027016 1.07E-99 dispersed
Chy01g01561 Chy-Chr1:21569039 Chy02g00663 Chy-Chr2:4027016 2.51E-110 dispersed
Chy01g02200 Chy-Chr1:26516668 Chy02g00663 Chy-Chr2:4027016 1.41E-113 dispersed
Chy02g00663 Chy-Chr2:4027016 Chy11g00664 Chy-Chr11:8175368 1.33E-113 dispersed
Chy04g00655 Chy-Chr4:7508627 Chy02g00663 Chy-Chr2:4027016 2.96E-99 dispersed
Chy12g01597 Chy-Chr12:19527270 Chy02g00663 Chy-Chr2:4027016 2.02E-73 dispersed
Chy02g00663 Chy-Chr2:4027016 Chy03g01477 Chy-Chr3:17237665 4.87E-119 wgd
Chy02g00663 Chy-Chr2:4027016 Chy07g01281 Chy-Chr7:17522003 2.95E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17466 PF00096 zf-C2H2 0.0051 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00663 K25869 - csv:101217597 918.687