Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00664 ATGAAGAAACGCACAGCAGTTTCAGTTTCAGGATCCTCGTTTTCACCTTCCATTCTTATCCCTATCTTCTTCCTCTTCCTCTCTCTTCCTGCATATGCCGATGACGGGTGGTGGGAAGGAGACAGTCCTGTGGTGAAGAGAGCCAATGAAAGAATCCCAATTCTTAAAACAGAGTACGGTGAGATCTCCGCGGTTGATTTCGACGATGGCACTCGATTTGGACGTTACCATCTTCAGTTCATCACATTGGAACCCAATTCACTGTTTCTCCCTGTTCTTCTTCATTCTGATATGGTGTTCTATGTCCACACTGGAAGTGGGAGATTGAATTGGTTTGATGACAATGGTTTGAAGGAGGTGGATTTACGGCGGGGAGATCTTTATAGGCTTCATCCAGGCTCCATTTTTTACTTGCAGAGTAGCTTTGAGACCGAACGTGAAAAGCTTCGAATTTATGCTCTGTTTTCCAGCACAGATGAGGATTCATTCAATCCTTCCATTGGAGCATACTCCCGCGTCACTGATCTGGTTCGTGGCTTCGGCAAAGAAGTTCTTCGTAAAGCCTTCATGGCCCCTGATGAAGTAATAGAGGAAATAATGAACACTAAGAGGCCGCCGCTTATCGTCCACGCTGCTGCGCCAACTCCGAGCATAAAGGCAAAGTCGTCGTCACCATGGGAATTTGAGGCTCGGTTATTGAAAACTTTCCTAGGAGGAGACGCAAGTGCGACAGAATTCAACAAGAAGAAGAAGAAGAAAGGCATATACAACGTTTATGAAGTAGACCCTGATTTTGAGAATTGCAATGGATGGAGTTTGACTGTAACTAAGAAAAACTCCCATCAATTGAAAGGCTCCAACATCGGCTTCCTCGTAGTCAACCTTACAGCGGGATCAATGATGGGTCCGCATTGGAATCCGAGGGCGTGGGAGATTGGGATTGTGACATCGGACGAGCCGGGGGTGGTTCGTGTAGGGTGTTCGAGCACCTCGGCAAACAGTTCAAAATGCAAGAATTGGAGTTTTGTGGTAGAGAAAGGGGATGTATTTGTAGTGCCAAGGTTCCATCCAATGGCGCAAATGTCATTCAACAATGGAACGTTTGTATTTGTGGGATTTAGCACAACGAATGGACATAACATGCCGCAGTTCTTTGCTGGGAGTAGCTCTGTTTTGAAAATTGTGGACAGGGAAGTATTGGCATGGTCGTTTGATGTGAATGTGACAACGATTGATCGGTTGTTGAAAGCTAGAGTTGAGTCGATTGTTTTGGAATGTACTTCATGTGCTGAAGAGGAAGTAAGGAAAATGGAAGAGGAAGCTGAGAGAGAGAGGGAGGAGGAGGAAGAAAGAAAGAGAGAAGAGGAGGAAGAAGAGAGAAAAAGGGAAGAAGAGGAACGGAGGAAGAGAGAGGAAGAGGAAGAGAGGAAACGGGAAGAAGAAGAAGAGAGAAAAAGGGAAGAAGAGGAAGAGGAAGAGAGGAAACGGGAAGAAGAAGAAGAGAGAAAAAGGGAAGAAGAGGAAGAGGAAGAGAGGAAACGGGAAGAAGAAGAAGAGAGAAAAAGGGAAGAAGAGGAACGGAGGAAGAGAGAGGAAGAGGAAGAGAGGGAGAGAGAAGAAGAAGAAGCACAGAAAGAGGAAGAGTGGAGGAGAGAAGAGGAAGAGAGGAGAAAGAGAGAAGAGGAAGAGAGAAAAAGAGAGGAAGAGGAGACAGAGAGAGAGAAAGAGAGAGAAGAGGAGGAAGAGAGGGAGGCAGAGAGAGAGGAGGAGGAAGCTAGGGAGAGAGAGGAAGAACATCAAAGAGAGAGAGGGAAGAGGCGGAGAGAGGGGGAGGAAAGACAAAGAAGAGGGTGGGAGGAAGAAGAAGAAGAAGAAGAAGGTGGAGGAGAGGAGCCGCAGCTGCCAGTACTAAGAATTTTGGAACAATGGACTTGA 1935 46.41 MKKRTAVSVSGSSFSPSILIPIFFLFLSLPAYADDGWWEGDSPVVKRANERIPILKTEYGEISAVDFDDGTRFGRYHLQFITLEPNSLFLPVLLHSDMVFYVHTGSGRLNWFDDNGLKEVDLRRGDLYRLHPGSIFYLQSSFETEREKLRIYALFSSTDEDSFNPSIGAYSRVTDLVRGFGKEVLRKAFMAPDEVIEEIMNTKRPPLIVHAAAPTPSIKAKSSSPWEFEARLLKTFLGGDASATEFNKKKKKKGIYNVYEVDPDFENCNGWSLTVTKKNSHQLKGSNIGFLVVNLTAGSMMGPHWNPRAWEIGIVTSDEPGVVRVGCSSTSANSSKCKNWSFVVEKGDVFVVPRFHPMAQMSFNNGTFVFVGFSTTNGHNMPQFFAGSSSVLKIVDREVLAWSFDVNVTTIDRLLKARVESIVLECTSCAEEEVRKMEEEAEREREEEEERKREEEEEERKREEEERRKREEEEERKREEEEERKREEEEEEERKREEEEERKREEEEEEERKREEEEERKREEEERRKREEEEEREREEEEAQKEEEWRREEEERRKREEEERKREEEETEREKEREEEEEREAEREEEEAREREEEHQRERGKRRREGEERQRRGWEEEEEEEEGGGEEPQLPVLRILEQWT* 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4031188 4033537 - Chy2G029310.1 Chy02g00664 220112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00664 644 CDD cupin_7S_vicilin-like_C 263 421 - -
Chy02g00664 644 MobiDBLite consensus disorder prediction 588 617 - -
Chy02g00664 644 MobiDBLite consensus disorder prediction 543 572 - -
Chy02g00664 644 PANTHER OS03G0336100 PROTEIN-RELATED 19 474 - -
Chy02g00664 644 MobiDBLite consensus disorder prediction 479 535 - -
Chy02g00664 644 SUPERFAMILY RmlC-like cupins 23 418 IPR011051 -
Chy02g00664 644 MobiDBLite consensus disorder prediction 573 587 - -
Chy02g00664 644 Gene3D Jelly Rolls 39 223 IPR014710 -
Chy02g00664 644 Pfam Cupin 256 410 IPR006045 -
Chy02g00664 644 MobiDBLite consensus disorder prediction 479 644 - -
Chy02g00664 644 SMART Cupin_1_3 46 197 IPR006045 -
Chy02g00664 644 SMART Cupin_1_3 256 412 IPR006045 -
Chy02g00664 644 CDD cupin_7S_vicilin-like_N 54 211 - -
Chy02g00664 644 PANTHER PREPROMP73 19 474 - -
Chy02g00664 644 Gene3D Jelly Rolls 244 428 IPR014710 -
Chy02g00664 644 Coils Coil 427 621 - -
Chy02g00664 644 MobiDBLite consensus disorder prediction 431 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00664 - - - csv:101216660 828.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00664 Chy-Chr2:4031188 Chy11g01321 Chy-Chr11:19436456 2.27E-46 dispersed
Chy02g00664 Chy-Chr2:4031188 Chy01g01548 Chy-Chr1:21369479 2.60E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00664 Chy_Chr02 FPKM 12.388889 15.552819 21.722 18.329359 28.806108 29.172585 24.683857 28.824249 28.033638 30.490854