Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00668 ATGGCCGCCGTGAATCTCCCACCGGACGCCGACAACTCATTACTCGTTTCCCATCTCTACAACCCTGAGGTTTACACCCAACAAGTGTTACCCCAACAAGGTACGGGAGAGGGAAGTAAGCCGACGAAGCGACGGAGGAGGAGGAGCAAAGCGAAGGAGGGAGGCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAATTTTGGGAATGAACATAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGACAGGTGGCGGTTTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAGCTGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTGTTCTTCTACAAAAATCCCATCTTGAATCTGAGTTGATGAAAGTGAAAGAGCAGTTGAAAGAAGCAAAGAATGAGATACGAAAAATAGTAGAAGGAAGTGAGGTGAGAAATAATTCAAGCAATAGTCCAAGCTCTTCAGTGACAATGGAAGCAGTTGAGGAAGCAGCAGTAGCTCCTTTGGGGGAGCTTTTTTTTGAAGAATATGAAGATTTTCTTCCCGATGAGTTGAACTCTGCAATCTTAAATATGAAATTGATTGAAAATAAATATAAATGGTCACGTGTATAA 681 44.64 MAAVNLPPDADNSLLVSHLYNPEVYTQQVLPQQGTGEGSKPTKRRRRRSKAKEGGGAAGLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVLLQKSHLESELMKVKEQLKEAKNEIRKIVEGSEVRNNSSNSPSSSVTMEAVEEAAVAPLGELFFEEYEDFLPDELNSAILNMKLIENKYKWSRV* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4050615 4053587 - Chy2G029350.1 Chy02g00668 220116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00668 226 Pfam Homeodomain 62 115 IPR001356 GO:0003677
Chy02g00668 226 MobiDBLite consensus disorder prediction 26 64 - -
Chy02g00668 226 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Chy02g00668 226 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Chy02g00668 226 CDD homeodomain 61 117 IPR001356 GO:0003677
Chy02g00668 226 Gene3D - 56 124 - -
Chy02g00668 226 SMART HOX_1 59 120 IPR001356 GO:0003677
Chy02g00668 226 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Chy02g00668 226 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Chy02g00668 226 Coils Coil 108 163 - -
Chy02g00668 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 188 IPR045224 GO:0003700
Chy02g00668 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40 11 188 - -
Chy02g00668 226 SUPERFAMILY Homeodomain-like 61 125 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00668 Chy07g01276 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00668 Chy-Chr2:4050615 Chy07g01276 Chy-Chr7:17481412 7.85E-43 dispersed
Chy02g00668 Chy-Chr2:4050615 Chy04g01982 Chy-Chr4:25679320 2.34E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17468 PF00046 Homeodomain 6.50E-17 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00668 K09338 - csv:101216890 348.591