Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00677 ATGGCTACTTCATTGCCTTTACCCGAACTTGTTTTTGTCTCACCGAAGCGTCTTTTCTCTTCTTCCAGTCCCGGATGTTTGCTCTATAGGGTTCCTTTCTCTAGAACTTGTAGGTTTAGGGTTCTTCGTCGGACGAAGCTCCGGGCTGTCAGAGAAGACGGTGTGGTTGCTGAAGAGCGGGAGAATGAGCTAATCAAGGAAGTTAATGGATATGGACTTGGAAGTAATGGAGCTGCTTACAATGGGAATGGTGATTACAGGTATAATGGTTGGGTTAATGGCGGAGTTACGACTGTGGAGAGTGAGAGTGGTGGAACCAATGGGAACTTGGTGAAGTATGTTAATGGAAATGGTGTTGCTGCGGCCGTGGTGGGAGAAATTCAAGCTTCGGAGTCAGTGGAGGAGGATAGGAAGAAGAGGATAGAGGAGATTGGTAAAGAAGAGGCTTGGTTTAAGCGGAGTGATCAGCAACAGGTCGAGGTTTCTGTGGCACCTGGTGGACGCTGGAATAGATTTAAAACATATTCAACAATTCAGAGAACCTTGGAGATATGGGGATTTGTTTTTAGTTTTGTCATCAAGGCTTGGCTTAACAGTCAGAAATTTACTTATCGAGGAGGAATGACTGAGGAGAAGAAGGTCGCTAGAAGAAAGATTGTAGCTAAGTGGTTGAAAGAAAGTATTTTAAGATTAGGTCCAACTTTTATTAAAATTGGTCAGCAATTTTCTACTAGAGTGGACATTCTACCACAAGAATATGTTGACCAGTTGTCAGAGCTTCAGGATCAAGTTCCTCCTTTCCCATCTGAGACAGCAGTATCTATAGTTGAGGAAGAGCTTGGAGGTCCTGTGGCCGATATATTTGATCAGTTTGATCGGGAGCCAATAGCTGCTGCTAGTCTTGGTCAGGTTCATCGTGCAAGATTGAAGGGGCAGGAAGTCGTGGTGAAAGTACAAAGGCCAAGTCTGAAAGAACTCTTTGATATCGATCTCAAGAACCTAAGGGTTATCGCAGAATACCTTCAAAAACTTGACCCAAAGTCGGATGGTGCAAAGAGAGATTGGGTTGCTATATATGATGAATGTGCAAATGTCCTGTATCAGGAGATAGATTACACCAAGGAAGCAGCCAATGCTGAGCAGTTTGCTACCAACTTTAAAAACTTGGACTATGTGAAAGTTCCATCAATATTCTGGGACTATACTACCCCACAGGTTCTGACTATGGAGTATGTTCCTGGAATTAAAATAAATAAGATTAAAGCTCTGGATCAACTAGGCCTTGATCGTAAACGGCTAGGTCGTTATGCTGTTGAATCTTACCTGGAGCAAATTCTGTCACATGGATTCTTCCATGCAGATCCTCATCCTGGGAATATTGCTGTTGATGATGTCAATGGAGGAAGGTTGATCTTTTATGATTTTGGAATGATGGGAAGTATCAGTTCAAATATTAGAGAAGGTTTGCTGGAAACGTTCTATGGAGTGTATGAGAAAGATCCAGACAAGGTTCTTCAGGCAATGATTCAAATGGGAGTTCTTGTGCCTACTGGAGATATGACAGCTGTTAGACGAACAGCTCAATTCTTCCTCAACAGTTTTGAAGAACGTCTGGCTGCACAGAGAAGGGAAAGAGAGATGGCAACTGCAGAACTTGGGTTTAAGAAACCATTGACAAAGGAGGAAAAGTTGATGAAAAAAAAGGAACGCCTAGCTGCAATTGGGGAAGATTTATTAGCCATTGCAGCAGATCAACCGTTTCGGTTTCCTGCCACGTTCACATTTGTTGTTAGAGCATTTTCAGTATTAGATGGCATTGGGAAAGGCCTTGACCCACGATTTGATATCACTGAAATTGCCAAGCCATATGCTCTGGAATTATTGAAGTTTCGGGAAGCAGGAGTTGAGGTCGCCTTGAAGGATTTCAGAAAGAGATGGAACAGGCAGTCTCGTGCATTCTATAACTTATTTAGACAGGCCGAAAGAGTCGAAAAACTTGCTGAAATTATCCAAAGACTGGAGCAAGGTGATCTCAAGCTTAGAGTTCGGGCTTTGGAATCTGAAAGATCATTCCAACGAGTTGCAACAGTTCAGAAGACGCTAGGAAATGCAATAGCTGCAGGAAGCCTAATCAACCTTGCAACTATATTACATATCAACTCCATTCGGATGCCTGCCACTATTGCCTACATCTTTTGTGCCTTTTTTGGGTTTCAAGTACTCATCGGTCTTATCAAAGTCAAAAGATTAGATGAACGGGAGAGGTTGATAACAGGAACCGCTTGA 2286 42.78 MATSLPLPELVFVSPKRLFSSSSPGCLLYRVPFSRTCRFRVLRRTKLRAVREDGVVAEERENELIKEVNGYGLGSNGAAYNGNGDYRYNGWVNGGVTTVESESGGTNGNLVKYVNGNGVAAAVVGEIQASESVEEDRKKRIEEIGKEEAWFKRSDQQQVEVSVAPGGRWNRFKTYSTIQRTLEIWGFVFSFVIKAWLNSQKFTYRGGMTEEKKVARRKIVAKWLKESILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETAVSIVEEELGGPVADIFDQFDREPIAAASLGQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKLDPKSDGAKRDWVAIYDECANVLYQEIDYTKEAANAEQFATNFKNLDYVKVPSIFWDYTTPQVLTMEYVPGIKINKIKALDQLGLDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISSNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRREREMATAELGFKKPLTKEEKLMKKKERLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGVEVALKDFRKRWNRQSRAFYNLFRQAERVEKLAEIIQRLEQGDLKLRVRALESERSFQRVATVQKTLGNAIAAGSLINLATILHINSIRMPATIAYIFCAFFGFQVLIGLIKVKRLDERERLITGTA* 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4117155 4126318 + Chy2G029440.1 Chy02g00677 220125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00677 761 Gene3D Transferase(Phosphotransferase) domain 1 340 497 - -
Chy02g00677 761 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 30 759 - -
Chy02g00677 761 Pfam ABC1 atypical kinase-like domain 259 507 IPR004147 -
Chy02g00677 761 Coils Coil 531 551 - -
Chy02g00677 761 PANTHER ABC TRANSPORTER-LIKE PROTEIN 30 759 - -
Chy02g00677 761 SUPERFAMILY Protein kinase-like (PK-like) 261 504 IPR011009 -
Chy02g00677 761 CDD ABC1_ADCK3-like 260 508 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00677 - - - csv:101215926 1444.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00347 Chy-Chr2:2243587 Chy02g00677 Chy-Chr2:4117155 2.46E-31 dispersed
Chy02g00677 Chy-Chr2:4117155 Chy11g00725 Chy-Chr11:9665539 1.37E-180 dispersed
Chy12g01194 Chy-Chr12:16735716 Chy02g00677 Chy-Chr2:4117155 6.23E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g872 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla03g01013 Cam03g1067 Cec03g1064 Cco03g1059 Clacu03g1038 Cmu03g1628 Cre03g1329 Lsi06g00691 . Chy02g00677 Cme02g00904
Vvi7g1137 . . . . . . . . . Cmo07g00508 . . . . Sed14g1089 Cpe19g00791 . Bhi03g01256 Tan03g1945 Cmetu10g0647 . Hepe04g1480 . . . . . . . . . . . . . . . . Cme08g00817 . . Bda11g01879 Bda14g01020 . . . . . . . Cma03g00776 . Car03g00706 Car07g00447 Cpe10g00587 . . . . . . . . . . . . . . . . . Chy02g00677 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005789 3 1 2 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00677 Chy_Chr02 FPKM 2.303678 2.454256 0.323532 0.7423 1.743865 1.775722 1.693695 0.17334 0.199801 0.120691