Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00694 ATGGCGGGTCAACCGTCAGATTCTTCCCCTCTTATTCCTCCGGCGCCGATCACCGACCCTAGTGAGATCGACCTTGAAGCTGGTCAAGGGGAACAAATTCAGTGTAGAATTTGCCTTGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGGACATCCAAATATGTTCATCGAGAATGTCTGGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCTTTTGCTCACTGTACCACATGTAAGGCCCCTTACCATTTGAGAGTACATGCTGTTGCTGACAGAAAATGGCGAACCCTGAAATTTCGATTTTTTGTGACTAGAGACATTATATTTATATTTTTGGCGGTTCAGCTTGTAATTGCTTCTCTGGGATATTTGACATACTTAATAGATGGTTGTCAACATTACTGGCTTCGTCTTACTTGGGGTTTTGATAGCAAAATTAGTTTTTATTACATAAGCGGGGCTTTATTATTTTTTGCATTGCTCGGCGTATCTGGCTGCTTCATCACTTGTTATGATCGGAGAGTTAGGAGTGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCTGGACTATGTGCAGACTGTCATTTACCTGGTACTCTTTGTATGTGGACCGACTGTACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACTGAATGTGGATGCCTAGGTGGTGCTGGTGAAGCAGGACTGCCATTATTACTTATAATGGCCTTGATTGTTCTTGGTTTGTTCACAGTGATTGGTATATTCTACAGTGTCTTGGTGGCTACCATGGTTGGCCAACGAATATGGCAACGACACTATCACATACTTGCGAAAAGAATGCTAACAAAGGAATATGTTGTGGAAGATGTAGATGGGGAGATGACAGGATCTGACTGGTTGCCTCCACCACTTCCTGCAGAGCACGTTCAACAGCTGAAAACTCTTGGCCTTTTATGA 972 43.72 MAGQPSDSSPLIPPAPITDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASLGYLTYLIDGCQHYWLRLTWGFDSKISFYYISGALLFFALLGVSGCFITCYDRRVRSDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLLIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4195579 4199905 + Chy2G029610.1 Chy02g00694 220142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00694 323 CDD RING_CH-C4HC3_MARCH 35 83 - -
Chy02g00694 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
Chy02g00694 323 SMART ringv_2 34 83 IPR011016 GO:0008270
Chy02g00694 323 PANTHER BNAA04G12620D PROTEIN 6 323 - -
Chy02g00694 323 ProSiteProfiles Zinc finger RING-CH-type profile. 27 89 IPR011016 GO:0008270
Chy02g00694 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 323 - -
Chy02g00694 323 Pfam RING-variant domain 35 82 IPR011016 GO:0008270
Chy02g00694 323 SUPERFAMILY RING/U-box 31 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00694 Chy-Chr2:4195579 Chy02g01958 Chy-Chr2:23225121 9.53E-69 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00694 - - csv:101214008 659.833