Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00726 ATGAATCCTCCCACTTTTCCTATCAAATTTTCCGGCGATCCACTTCCGACCACCACTATCATCGGAAGCGGGGACCCACGGATTCCCTTACAAAACCTCTCAACCATCCGTTCCAGAATGGATGCTCTCCAAGTCTTCCTTTCCCATAACATCGACACAGAAGTTCGTATCAGTAATCAGCAGATGCATGCCGTTTCATCTGAAATCTTCACCGCAATCCAACAGATCATTGTCAACGGCGCCGCTCTTCTAACCTGCGCCCAATCGAAAACCCCGACTCCCCCGGATTTGACGGCTTCAGCAACTCGAACTCATCCGAATCCTGTAACAGATAAATCAATGGCGGAGCTGAAGGTGGAGGGTGTAGATGAGATTGCAATAACCGAATCTGAAGAATTTGACCCAGATTGGGAAATAGTGGAGCTGGATGCGATGGAATTGCTAGCGGAACACATCCATTTCTGTGAAATCTGCGGGAAAGGGTTCAAGCGAGACGCGAATTTACGGATGCATATGCGGGCCCATGGGAATCAATTCAAGACCCCAGAGGCTTTGGCTAAGCCGTTGGATGTTGTTGGAGCGGACCACAGAGCGAAACGCACGCGATTCTCCTGCCCTTACGACGGTTGTGTAAGGAACAAAATGCACAAGAAATTTAGGGCACTGAAATCCTTGATTTGCGTGAAGAATCACTTCAAGCGTAGCCACTGCCCTAAGATGTTCTCTTGTAATCGTTGCAACAAGAAGAGTTTCTCTGTAATGGCGGATTTGAAAAGCCATTTGAAGCACTGCGGTGAGTCCAAGTGGCGGTGTTCTTGTGGAACCACCTTCTCCCGTAAGGATAAGTTGTTTGGTCATATGGCGTTGTTCGAAGGCCACATGCCGGCAGTTCCGGATGACGCTTGTCCCACGTCGGCGACGACGATGGTTGAAGATGGAGACAGTAATCAGATTTCGAAGGATGTTAATCTCCAAAACGGGTCCAATGGTTCGTCGGATGATGGATCTTTTGAGTCGTTTCTTAATGGGTTTGGTTTGATTGAGAATCAAAGTTTAGAAGAGAACATATTAATCACCAAATTAATTAACTACATAATATCTATCATGTCATCGGTGTCTTTGGAAGCTTTCGCAATGGCCGGAATGGAGTACTCCGGCGAGTGGGGGATAGACGTTGAGGAATGGGAAAGCCAGGACTTGGATTACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGTTAACGATAACGACAAAGCGTCGGATCAACAACCTCCAAGTCTTTCTGAGCCTCCCTCGCAGGCTTGCCGTTCATGTTGA 1320 48.11 MNPPTFPIKFSGDPLPTTTIIGSGDPRIPLQNLSTIRSRMDALQVFLSHNIDTEVRISNQQMHAVSSEIFTAIQQIIVNGAALLTCAQSKTPTPPDLTASATRTHPNPVTDKSMAELKVEGVDEIAITESEEFDPDWEIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDVVGADHRAKRTRFSCPYDGCVRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVPDDACPTSATTMVEDGDSNQISKDVNLQNGSNGSSDDGSFESFLNGFGLIENQSLEENILITKLINYIISIMSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDQQPPSLSEPPSQACRSC* 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4428239 4431586 + Chy2G029930.1 Chy02g00726 220174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00726 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
Chy02g00726 439 Gene3D Classic Zinc Finger 153 176 - -
Chy02g00726 439 Gene3D Classic Zinc Finger 228 298 - -
Chy02g00726 439 MobiDBLite consensus disorder prediction 409 439 - -
Chy02g00726 439 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 23 356 - -
Chy02g00726 439 MobiDBLite consensus disorder prediction 419 439 - -
Chy02g00726 439 Pfam Zinc finger, C2H2 type 154 175 IPR013087 -
Chy02g00726 439 SUPERFAMILY beta-beta-alpha zinc fingers 150 176 IPR036236 -
Chy02g00726 439 SMART c2h2final6 269 293 IPR013087 -
Chy02g00726 439 SMART c2h2final6 203 236 IPR013087 -
Chy02g00726 439 SMART c2h2final6 241 263 IPR013087 -
Chy02g00726 439 SMART c2h2final6 153 175 IPR013087 -
Chy02g00726 439 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Chy02g00726 439 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 23 356 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00726 Chy-Chr2:4428239 Chy12g00769 Chy-Chr12:11794489 5.92E-70 dispersed
Chy02g00726 Chy-Chr2:4428239 Chy03g01477 Chy-Chr3:17237665 2.28E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17472 PF00096 zf-C2H2 0.00019 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00726 - - csv:101210849 678.707