Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy02g00726 | ATGAATCCTCCCACTTTTCCTATCAAATTTTCCGGCGATCCACTTCCGACCACCACTATCATCGGAAGCGGGGACCCACGGATTCCCTTACAAAACCTCTCAACCATCCGTTCCAGAATGGATGCTCTCCAAGTCTTCCTTTCCCATAACATCGACACAGAAGTTCGTATCAGTAATCAGCAGATGCATGCCGTTTCATCTGAAATCTTCACCGCAATCCAACAGATCATTGTCAACGGCGCCGCTCTTCTAACCTGCGCCCAATCGAAAACCCCGACTCCCCCGGATTTGACGGCTTCAGCAACTCGAACTCATCCGAATCCTGTAACAGATAAATCAATGGCGGAGCTGAAGGTGGAGGGTGTAGATGAGATTGCAATAACCGAATCTGAAGAATTTGACCCAGATTGGGAAATAGTGGAGCTGGATGCGATGGAATTGCTAGCGGAACACATCCATTTCTGTGAAATCTGCGGGAAAGGGTTCAAGCGAGACGCGAATTTACGGATGCATATGCGGGCCCATGGGAATCAATTCAAGACCCCAGAGGCTTTGGCTAAGCCGTTGGATGTTGTTGGAGCGGACCACAGAGCGAAACGCACGCGATTCTCCTGCCCTTACGACGGTTGTGTAAGGAACAAAATGCACAAGAAATTTAGGGCACTGAAATCCTTGATTTGCGTGAAGAATCACTTCAAGCGTAGCCACTGCCCTAAGATGTTCTCTTGTAATCGTTGCAACAAGAAGAGTTTCTCTGTAATGGCGGATTTGAAAAGCCATTTGAAGCACTGCGGTGAGTCCAAGTGGCGGTGTTCTTGTGGAACCACCTTCTCCCGTAAGGATAAGTTGTTTGGTCATATGGCGTTGTTCGAAGGCCACATGCCGGCAGTTCCGGATGACGCTTGTCCCACGTCGGCGACGACGATGGTTGAAGATGGAGACAGTAATCAGATTTCGAAGGATGTTAATCTCCAAAACGGGTCCAATGGTTCGTCGGATGATGGATCTTTTGAGTCGTTTCTTAATGGGTTTGGTTTGATTGAGAATCAAAGTTTAGAAGAGAACATATTAATCACCAAATTAATTAACTACATAATATCTATCATGTCATCGGTGTCTTTGGAAGCTTTCGCAATGGCCGGAATGGAGTACTCCGGCGAGTGGGGGATAGACGTTGAGGAATGGGAAAGCCAGGACTTGGATTACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGTTAACGATAACGACAAAGCGTCGGATCAACAACCTCCAAGTCTTTCTGAGCCTCCCTCGCAGGCTTGCCGTTCATGTTGA | 1320 | 48.11 | MNPPTFPIKFSGDPLPTTTIIGSGDPRIPLQNLSTIRSRMDALQVFLSHNIDTEVRISNQQMHAVSSEIFTAIQQIIVNGAALLTCAQSKTPTPPDLTASATRTHPNPVTDKSMAELKVEGVDEIAITESEEFDPDWEIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDVVGADHRAKRTRFSCPYDGCVRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVPDDACPTSATTMVEDGDSNQISKDVNLQNGSNGSSDDGSFESFLNGFGLIENQSLEENILITKLINYIISIMSSVSLEAFAMAGMEYSGEWGIDVEEWESQDLDYCPPPYLLAEGRVNDNDKASDQQPPSLSEPPSQACRSC* | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4428239 | 4431586 | + | Chy2G029930.1 | Chy02g00726 | 220174 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy02g00726 | 439 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 153 | 180 | IPR013087 | - | |
Chy02g00726 | 439 | Gene3D | Classic Zinc Finger | 153 | 176 | - | - | |
Chy02g00726 | 439 | Gene3D | Classic Zinc Finger | 228 | 298 | - | - | |
Chy02g00726 | 439 | MobiDBLite | consensus disorder prediction | 409 | 439 | - | - | |
Chy02g00726 | 439 | PANTHER | ZINC FINGER PROTEIN STOP1 HOMOLOG | 23 | 356 | - | - | |
Chy02g00726 | 439 | MobiDBLite | consensus disorder prediction | 419 | 439 | - | - | |
Chy02g00726 | 439 | Pfam | Zinc finger, C2H2 type | 154 | 175 | IPR013087 | - | |
Chy02g00726 | 439 | SUPERFAMILY | beta-beta-alpha zinc fingers | 150 | 176 | IPR036236 | - | |
Chy02g00726 | 439 | SMART | c2h2final6 | 269 | 293 | IPR013087 | - | |
Chy02g00726 | 439 | SMART | c2h2final6 | 203 | 236 | IPR013087 | - | |
Chy02g00726 | 439 | SMART | c2h2final6 | 241 | 263 | IPR013087 | - | |
Chy02g00726 | 439 | SMART | c2h2final6 | 153 | 175 | IPR013087 | - | |
Chy02g00726 | 439 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 155 | 175 | IPR013087 | - | |
Chy02g00726 | 439 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 23 | 356 | IPR044300 | GO:0010044|GO:0010447 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00726 | Chy-Chr2:4428239 | Chy12g00769 | Chy-Chr12:11794489 | 5.92E-70 | dispersed | |
Chy02g00726 | Chy-Chr2:4428239 | Chy03g01477 | Chy-Chr3:17237665 | 2.28E-31 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17472 | PF00096 | zf-C2H2 | 0.00019 | CL0361 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy02g00726 | - | - | csv:101210849 | 678.707 |