Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00745 ATGGATTTCGAAGATCAAGACGAACACGAAGAAGAAGAGATGGACATGGCGGCAGCGAGTTACGACGACTCGTTGCCCAACTCAGGAACCCGACTCAAAATCCCCACTACTACTGACCAAATCATGTCATCATCTCCTGCACAGAGGAAACCCAAATACAGAGAGTGCTTAAAAAATCACGCCGTTGGCATTGGAGGTCACGCCCTTGACGGTTGCGGCGAATTTCTAGCCGCTGGAGCTGAAGGTACACTCGACGCTCTTAAATGCGCCGCTTGTAACTGCCACCGCAACTTCCACCGTAAAGAAACCGACAACAGCCTTAACCCCGCCGTAGGCGTCGGTCTCGGAATCGGAGAGCCATTTCTATTACCCCACCCAGGACAGTTCTCCCCTTACTACCGAACCCCAGCTGGATACCTCCACGTGGCGCCACATCACAGGCCATTAGCTCTCCCGTCGACATCAGGCGGCGGTGGCACCCACAGCAGAGAAGAACAGGAAGATATGTCGAATCCGAGCGGCGGAGGTGGCGGAGGAAGTAGTAGCTTTGGGAAGAAGAGATTTAGAACTAAATTTACACAAGAACAGAAGGACAGAATGCTGGGACTGGCGGAGACATTGGGTTGGAGAATTCAAAAACACGACGAGGCGGTGGTGCAGCAGTTCTGTAACGACACGGGAGTAAAGCGGCACGTGCTTAAGGTGTGGATGCATAATAACAAGCACACTCTTGGTAAGAAACCCTAG 747 52.34 MDFEDQDEHEEEEMDMAAASYDDSLPNSGTRLKIPTTTDQIMSSSPAQRKPKYRECLKNHAVGIGGHALDGCGEFLAAGAEGTLDALKCAACNCHRNFHRKETDNSLNPAVGVGLGIGEPFLLPHPGQFSPYYRTPAGYLHVAPHHRPLALPSTSGGGGTHSREEQEDMSNPSGGGGGGSSSFGKKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEAVVQQFCNDTGVKRHVLKVWMHNNKHTLGKKP* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4605793 4606539 + Chy2G030120.1 Chy02g00745 220193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00745 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 247 - -
Chy02g00745 248 SUPERFAMILY Homeodomain-like 172 246 IPR009057 -
Chy02g00745 248 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 185 241 IPR006455 -
Chy02g00745 248 MobiDBLite consensus disorder prediction 23 47 - -
Chy02g00745 248 Gene3D - 170 246 - -
Chy02g00745 248 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 52 102 IPR006456 -
Chy02g00745 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 36 247 - -
Chy02g00745 248 MobiDBLite consensus disorder prediction 148 185 - -
Chy02g00745 248 Pfam ZF-HD protein dimerisation region 52 103 IPR006456 -
Chy02g00745 248 MobiDBLite consensus disorder prediction 1 18 - -
Chy02g00745 248 MobiDBLite consensus disorder prediction 1 50 - -
Chy02g00745 248 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 102 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00745 - - - csv:101204784 480.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00645 Chy-Chr2:3929084 Chy02g00745 Chy-Chr2:4605793 1.95E-55 dispersed
Chy02g00745 Chy-Chr2:4605793 Chy03g01454 Chy-Chr3:17118515 3.13E-57 dispersed
Chy02g00745 Chy-Chr2:4605793 Chy03g01330 Chy-Chr3:16297386 2.23E-55 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00745 . 50 244 ZF-HD Transcription Factor Family AT4G24660 51.3 7.9e-47 184.1
Chy04g01536 . 12 298 ZF-HD Transcription Factor Family AT5G15210 52.2 1.4e-50 196.8
Chy09g00254 . 6 232 ZF-HD Transcription Factor Family AT5G15210 51.5 1.7e-37 153.3
Chy04g01536 . 22 283 ZF-HD Transcription Factor Family AT3G28920 62.4 4.9e-60 228.4
Chy09g00254 . 16 233 ZF-HD Transcription Factor Family AT3G28920 61.2 6.5e-44 174.9
Chy04g01536 . 30 262 ZF-HD Transcription Factor Family AT5G39760 62.7 3.2e-49 192.6
Chy02g00745 . 50 244 ZF-HD Transcription Factor Family AT4G24660 51.3 7.9e-47 184.1
Chy04g01536 . 30 262 ZF-HD Transcription Factor Family AT5G39760 62.7 3.2e-49 192.6
Chy04g01536 . 12 298 ZF-HD Transcription Factor Family AT5G15210 52.2 1.4e-50 196.8
Chy09g00254 . 6 232 ZF-HD Transcription Factor Family AT5G15210 51.5 1.7e-37 153.3
Chy04g01536 . 22 283 ZF-HD Transcription Factor Family AT3G28920 62.4 4.9e-60 228.4
Chy09g00254 . 16 233 ZF-HD Transcription Factor Family AT3G28920 61.2 6.5e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17474 PF04770 ZF-HD_dimer 1.00E-28 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00745 Chy_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0